PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01985.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 193aa    MW: 20839.2 Da    PI: 9.8849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01985.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1865115155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta eAa a+++a+++++g
  mrna01985.1-v1.0-hybrid  65 CNYRGVRQRT-WGKWVAEIRSP---N-RgSRLWLGTFPTAIEAALAYDKAARAMYG 115
                              56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1365115IPR001471AP2/ERF domain
CDDcd000181.95E-3165123No hitNo description
SMARTSM003803.0E-3566129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3266124IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2166123IPR016177DNA-binding domain
PROSITE profilePS5103222.07666123IPR001471AP2/ERF domain
PRINTSPR003674.7E-106778IPR001471AP2/ERF domain
PRINTSPR003674.7E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTNLKKVHTK QDGSSPVAEI LAKWKEYNDH LESSNDGSKP TRKVPAKGSR KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIRSPNRGSR LWLGTFPTAI EAALAYDKAA RAMYGSAARL  120
NFPKVTFSSS GRATVLAPSC VATSAGSESS GTSGHSEDFS PQDKVNSHSP HIVNNDVIDL  180
NQMDLNQTEE EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1966123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-1966123563ATERF1
3gcc_A6e-1966123563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01985.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460156.11e-143PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR22e-51DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A3S8T9021e-141A0A3S8T902_FRAAN; Transcription factor ERF28
STRINGXP_004293490.11e-119(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.19e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]