PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01920.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 268aa    MW: 29014 Da    PI: 7.0419
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01920.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.3e-3158114259
              ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              +++rY+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++e
  mrna01920.1-v1.0-hybrid  58 KACRYRECLKNHAVGIGGHALDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKETDE 114
                              579**************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.2E-2860112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2261113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2861111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04962111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-18191265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-32195266IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-25204260IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEFEDQEEHD EEMEMEPSYD SLVNNNGGGG GGGARLKMAA EAAAGQLQQQ QQHQQTTKAC  60
RYRECLKNHA VGIGGHALDG CGEFLAAGAE GTLDALKCAA CNCHRNFHRK ETDEPYGQLV  120
PHQSHVGGGH HNHHVHGFGH PQFSPSGGYY RTPAGYLHVT TQHRPLALPS TSGGGGTDQD  180
DDMSNPSGGG GGGSGFGMGT TSSKKRFRTK FSQEQKERML ELAERLGWRI QKQDEAAVQS  240
FCDETGVKRH VLKVWMHNNK HTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-252032621675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01920.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288462.10.0PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotA2Z2599e-81ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH57e-81ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2P6RQ401e-113A0A2P6RQ40_ROSCH; Putative transcription factor ZF-HD family
STRINGXP_004288462.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-59homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]