PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01894.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 439aa    MW: 49673.6 Da    PI: 7.1346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01894.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12269314454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  mrna01894.1-v1.0-hybrid 269 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINNL 314
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-2625179IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.40E-13263319No hitNo description
SuperFamilySSF474591.96E-17263328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.869265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16269328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00302385435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEEINIISSC SPPYSICQET SANTLQQRLQ LIVQNRPELW VYSIFWQASK DRNGVLSLSW  60
AGGHSRGTRD FSSKKLDNYY QPKFGLELQT PKKGINRQVQ ALFQEDMDMD INGDVTDSEW  120
FYFYSLSLTQ SFAAGHGNNN IVGRTFCSGA FVWLAGDHEF QLYECERVKE ARMYGIQTLN  180
SKLIFGLDKI TTSCSVSNSN RGHVHVPQLQ NTMFPESDQK EWTTQGGRKE TVNNLSGSSS  240
DSGPSENTSS TRLRKRRKSD KGERDSPINH VEAERQRREK LNHRFYALRS VVPNVSKMDK  300
ASLLSDAVVY INNLKTKIEE LEAKIHAQPK KHKSSVMSDN TLDYSQMTNS LTYRAAAATE  360
VDVKIVGSEA MIRVRCPDDE DYPNARLMNA LKDLELHIHH ASISSVNDFM LQDVVARVPD  420
GFTSEEAMRT ALIQRFDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-23264324363Transcription factor MYC2
5gnj_B7e-23264324363Transcription factor MYC2
5gnj_E7e-23264324363Transcription factor MYC2
5gnj_F7e-23264324363Transcription factor MYC2
5gnj_G7e-23264324363Transcription factor MYC2
5gnj_I7e-23264324363Transcription factor MYC2
5gnj_M7e-23264324363Transcription factor MYC2
5gnj_N7e-23264324363Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01894.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024174896.10.0transcription factor MYC2-like isoform X2
TrEMBLA0A2P6P4360.0A0A2P6P436_ROSCH; Putative transcription factor bHLH family
STRINGXP_004309579.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-48bHLH family protein