PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01894.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 439aa MW: 49673.6 Da PI: 7.1346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 269 | 314 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L mrna01894.1-v1.0-hybrid 269 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINNL 314 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.3E-26 | 25 | 179 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.40E-13 | 263 | 319 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-17 | 263 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.869 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-10 | 269 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 269 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-15 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00302 | 385 | 435 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MEEINIISSC SPPYSICQET SANTLQQRLQ LIVQNRPELW VYSIFWQASK DRNGVLSLSW 60 AGGHSRGTRD FSSKKLDNYY QPKFGLELQT PKKGINRQVQ ALFQEDMDMD INGDVTDSEW 120 FYFYSLSLTQ SFAAGHGNNN IVGRTFCSGA FVWLAGDHEF QLYECERVKE ARMYGIQTLN 180 SKLIFGLDKI TTSCSVSNSN RGHVHVPQLQ NTMFPESDQK EWTTQGGRKE TVNNLSGSSS 240 DSGPSENTSS TRLRKRRKSD KGERDSPINH VEAERQRREK LNHRFYALRS VVPNVSKMDK 300 ASLLSDAVVY INNLKTKIEE LEAKIHAQPK KHKSSVMSDN TLDYSQMTNS LTYRAAAATE 360 VDVKIVGSEA MIRVRCPDDE DYPNARLMNA LKDLELHIHH ASISSVNDFM LQDVVARVPD 420 GFTSEEAMRT ALIQRFDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-23 | 264 | 324 | 3 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01894.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024174896.1 | 0.0 | transcription factor MYC2-like isoform X2 | ||||
TrEMBL | A0A2P6P436 | 0.0 | A0A2P6P436_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004309579.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 8e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna01894.1-v1.0-hybrid |