PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01886.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 475aa    MW: 52627.9 Da    PI: 8.8628
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01886.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC543e-17181220140
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                              d+ep+rC+RtDGKkWRCsr+   ++k CErH+h+ rsr+ 
  mrna01886.1-v1.0-hybrid 181 DPEPWRCKRTDGKKWRCSRDRGIDQKFCERHCHKRRSRKH 220
                              79*********************************88764 PP
2QLQ46.61e-16119154237
                      QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              +FT+aQ ++L++Q  +yKy++a +PvP++Ll+ i++
  mrna01886.1-v1.0-hybrid 119 PFTPAQRAELEAQTVIYKYIMACVPVPQQLLLSITN 154
                              8*******************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-7118154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.468119154IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-11119152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.806181226IPR014977WRC domain
PfamPF088795.3E-14182220IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGKSRRNGFV ETERECCDIG LGLMMETHDQ SCKKMNQMVM VMPHHEPQFC SGGFDGGTAT  60
PLFYPTRNNN AVTTDIYNTA SSDVGSVVVP KNLQQPYYYD SLSFSSSVGG MVNVNVRIPF  120
TPAQRAELEA QTVIYKYIMA CVPVPQQLLL SITNSSPNGV RNSSRTRGVR DMFEGFSKSL  180
DPEPWRCKRT DGKKWRCSRD RGIDQKFCER HCHKRRSRKH VESIPNLLNN NINKNANMLS  240
PRPSAFKNYN QTPLSSSMVT PAAASHAQPR ALDWFMNGES ASVAVSNQEW EQLMPFKLGS  300
HTSKRDTDVD FPKQQNESSL NLYRGGSQGL QSQRSHDHLG GALNSNQAQQ TRHFIDAWST  360
ERAGNGIDEL GKRTRDSVPL NQKLPLSSLT LSMSGKNSEA NEENGNRQMG VGVLGSERQN  420
VTQWMSPLSW MSSTPGGPLA EALCLGIASS TRTTSTNGCR NSNADVRQEF DLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01886.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470891.10.0PREDICTED: growth-regulating factor 7 isoform X1
TrEMBLA0A2P6P4700.0A0A2P6P470_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004309575.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.13e-36growth-regulating factor 8