PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01855.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 466aa    MW: 50527 Da    PI: 7.4499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01855.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-31115219199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  mrna01855.1-v1.0-hybrid 115 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 200
                              89***************************966778999************************************************ PP

                              EE-.SS.SEE..EEEEE-S CS
                       B3  83 kld.gr.sefelvvkvfrk 99 
                              ++  g+  + +l++ ++r+
  mrna01855.1-v1.0-hybrid 201 QRGlGElGKDRLYIDWRRR 219
                              *777889999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-42105223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-29112206IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-26113202No hitNo description
SMARTSM010193.4E-22115220IPR003340B3 DNA binding domain
PROSITE profilePS5086314.579115220IPR003340B3 DNA binding domain
PfamPF023628.0E-29115219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNFGASRDGG GGGFSEDEVR GKLPFSSYSP TSPSSSSSSP HFNTASTATL LPAGLSSSSA  60
SWDTYGGGGG PDTRLELMDS STPRNNAENC KQESNNEAHI TTAEAVAAIE KEHMFDKVVT  120
PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRT GKPWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK KLDAGDIVSF QRGLGELGKD RLYIDWRRRP DAPDPNHHHH HALHHHSYGI  240
PPPHHYSFHR SVPWSPLLMR PPGSSSVTAR EHHLQQLNYS MNIHPYRNSS YSSGSAGGGG  300
GFGYGNVVNM NMNMNPVCTA PVYYLRSGGV GGGAVFPQQL HEQEGSTASA AAHVHSHHQV  360
GLGQLSRVNV VEPMVLESVP VVHGKVAAAG KRLRLFGVNM DCAVSDQSSD ECDILSSTTT  420
TTAAMALSQP PLQLRLYDGT PATTDFFNRG KTSSSSTSMS LDFDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-661102203114B3 domain-containing transcription factor NGA1
5os9_B7e-661102203114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01855.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309568.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A2P6P4B60.0A0A2P6P4B6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004309568.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-67B3 family protein