PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01855.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 466aa MW: 50527 Da PI: 7.4499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.8 | 1.6e-31 | 115 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F mrna01855.1-v1.0-hybrid 115 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 200 89***************************966778999************************************************ PP EE-.SS.SEE..EEEEE-S CS B3 83 kld.gr.sefelvvkvfrk 99 ++ g+ + +l++ ++r+ mrna01855.1-v1.0-hybrid 201 QRGlGElGKDRLYIDWRRR 219 *777889999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-42 | 105 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-29 | 112 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.71E-26 | 113 | 202 | No hit | No description |
SMART | SM01019 | 3.4E-22 | 115 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.579 | 115 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-29 | 115 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MNFGASRDGG GGGFSEDEVR GKLPFSSYSP TSPSSSSSSP HFNTASTATL LPAGLSSSSA 60 SWDTYGGGGG PDTRLELMDS STPRNNAENC KQESNNEAHI TTAEAVAAIE KEHMFDKVVT 120 PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRT GKPWRFRYSY WNSSQSYVMT 180 KGWSRFVKEK KLDAGDIVSF QRGLGELGKD RLYIDWRRRP DAPDPNHHHH HALHHHSYGI 240 PPPHHYSFHR SVPWSPLLMR PPGSSSVTAR EHHLQQLNYS MNIHPYRNSS YSSGSAGGGG 300 GFGYGNVVNM NMNMNPVCTA PVYYLRSGGV GGGAVFPQQL HEQEGSTASA AAHVHSHHQV 360 GLGQLSRVNV VEPMVLESVP VVHGKVAAAG KRLRLFGVNM DCAVSDQSSD ECDILSSTTT 420 TTAAMALSQP PLQLRLYDGT PATTDFFNRG KTSSSSTSMS LDFDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-66 | 110 | 220 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-66 | 110 | 220 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01855.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309568.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
TrEMBL | A0A2P6P4B6 | 0.0 | A0A2P6P4B6_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004309568.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 6e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna01855.1-v1.0-hybrid |