PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01851.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 774aa    MW: 86661.5 Da    PI: 4.8632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01851.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.2e-5391431127
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+++d++k+ePwdLpk  ++k++++ew+fF++rd+ky++g+r+nrat++gyWk
  mrna01851.1-v1.0-hybrid   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPDIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWK 93 
                              699************************999.99***************5458899999**************************** PP

                      NAM  85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                              atgkd++++s+       ++ lvg+kktLvfykgrapkge+t+W+mheyr
  mrna01851.1-v1.0-hybrid  94 ATGKDRTIKSRrfksaanSTGLVGMKKTLVFYKGRAPKGERTSWIMHEYR 143
                              **********977766555555***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-604167IPR003441NAC domain
PROSITE profilePS5100557.0829167IPR003441NAC domain
PfamPF023657.7E-2710143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRRFKSAA NSTGLVGMKK  120
TLVFYKGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV  180
DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISQWN DSFDHMTPDT VTMPPIDSYM  240
ASDVEVSGPE ETIFSGEMSF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHNNGLYFQ  300
DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA  360
WGYPDAKAAQ HNLDTGARGL SNEQFDIEDL LRKTSFGAYQ AEAPASLYDH KPAMENIGYS  420
GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGLKIKIRSR LPQERPNSNF VDQGSANRRL  480
RLAVRNHTRV SNHNKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNKD  540
YDLGGKNEIS CETNQPPEPS NSGKPVTRGM ATRIRLMVNG SPGSVANSNV SDTKYGQEDK  600
VKSSITEASE TREESPRLNE QEVKCHPMKL DANQKIAEEP STSLVDENKK TIEEAATKTR  660
SRTGGDDNSL HSGHIGMSWN MDIPLDLDVA RKVAGSILGE KREIKLRKMI LVAIVAEMME  720
EYTVLLARIL EHMFQSAPFP RRVRFLILRN LPFVSTYPLP LPPHPLLGAT AAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-42416712165NO APICAL MERISTEM PROTEIN
1ut4_B1e-42416712165NO APICAL MERISTEM PROTEIN
1ut7_A1e-42416712165NO APICAL MERISTEM PROTEIN
1ut7_B1e-42416712165NO APICAL MERISTEM PROTEIN
4dul_A1e-42416712165NAC domain-containing protein 19
4dul_B1e-42416712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01851.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309509.10.0PREDICTED: uncharacterized protein LOC101295292
TrEMBLA0A2P6P4B30.0A0A2P6P4B3_ROSCH; Putative transcription factor NAM family
STRINGXP_004309509.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-124NAC transcription factor-like 9