PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01851.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 774aa MW: 86661.5 Da PI: 4.8632 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7.2e-53 | 9 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+++d++k+ePwdLpk ++k++++ew+fF++rd+ky++g+r+nrat++gyWk mrna01851.1-v1.0-hybrid 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPDIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWK 93 699************************999.99***************5458899999**************************** PP NAM 85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 atgkd++++s+ ++ lvg+kktLvfykgrapkge+t+W+mheyr mrna01851.1-v1.0-hybrid 94 ATGKDRTIKSRrfksaanSTGLVGMKKTLVFYKGRAPKGERTSWIMHEYR 143 **********977766555555***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-60 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.082 | 9 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-27 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 774 aa Download sequence Send to blast |
MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI 60 KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRRFKSAA NSTGLVGMKK 120 TLVFYKGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV 180 DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISQWN DSFDHMTPDT VTMPPIDSYM 240 ASDVEVSGPE ETIFSGEMSF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHNNGLYFQ 300 DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA 360 WGYPDAKAAQ HNLDTGARGL SNEQFDIEDL LRKTSFGAYQ AEAPASLYDH KPAMENIGYS 420 GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGLKIKIRSR LPQERPNSNF VDQGSANRRL 480 RLAVRNHTRV SNHNKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNKD 540 YDLGGKNEIS CETNQPPEPS NSGKPVTRGM ATRIRLMVNG SPGSVANSNV SDTKYGQEDK 600 VKSSITEASE TREESPRLNE QEVKCHPMKL DANQKIAEEP STSLVDENKK TIEEAATKTR 660 SRTGGDDNSL HSGHIGMSWN MDIPLDLDVA RKVAGSILGE KREIKLRKMI LVAIVAEMME 720 EYTVLLARIL EHMFQSAPFP RRVRFLILRN LPFVSTYPLP LPPHPLLGAT AAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-42 | 4 | 167 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-42 | 4 | 167 | 12 | 165 | NAC domain-containing protein 19 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01851.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309509.1 | 0.0 | PREDICTED: uncharacterized protein LOC101295292 | ||||
TrEMBL | A0A2P6P4B3 | 0.0 | A0A2P6P4B3_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004309509.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13625 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-124 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | mrna01851.1-v1.0-hybrid |