PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01844.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 324aa    MW: 34989.6 Da    PI: 5.8727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01844.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-192574255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g
  mrna01844.1-v1.0-hybrid 25 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDEAARTLRG 74
                             689******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.50E-292582No hitNo description
Gene3DG3DSA:3.30.730.104.3E-292582IPR001471AP2/ERF domain
PROSITE profilePS5103220.5872582IPR001471AP2/ERF domain
SMARTSM003803.6E-362588IPR001471AP2/ERF domain
PfamPF008477.3E-132574IPR001471AP2/ERF domain
PRINTSPR003679.9E-82637IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-202683IPR016177DNA-binding domain
PRINTSPR003679.9E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGTTARTQNE GVRGRRKSSS RGHHRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDEAAR TLRGPNARTN FELPMSSNGA GVGGSENMEP FSFETDCDNG AEADGLRGAL  120
KAKLLDGKGL GRVHEKIDPC PPVVPRGGGV GFANPPIQQG SYVAGSSEQK SVAQNECIQL  180
LSHKNDRVTG DELRFDVRDQ TEATAAGHAA LNPGMVWSNE SPAYEVPWSN TLPMSTWPVS  240
TDHQQSIVNM SYTDQCPMEL PTTSRDHGKV TVTQQMSQIE GGMEGGGAWP AEQQYLQFEN  300
SWAAAAANGT WESPGPFYHP SVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1523921281Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01844.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309564.10.0PREDICTED: uncharacterized protein LOC101313172
TrEMBLA0A3Q8TDI30.0A0A3Q8TDI3_FRAAN; Transcription factor ERF39
STRINGXP_004309564.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-17related to AP2 11