PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna01828.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 770aa MW: 83546.7 Da PI: 5.5769

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna01828.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95	6.9e-30	91	175	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++le mrna01828.1-v1.0-hybrid 91 RWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELE 174 8*******************************************************************866665..****98 PP trihelix 87 a 87 a mrna01828.1-v1.0-hybrid 175 A 175 5 PP
2	trihelix	105.8	3.1e-33	497	582	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+ mrna01828.1-v1.0-hybrid 497 RWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKVR-PEDAKTCPYFHELD 581 8******************************************************************97.99999******8 PP trihelix 87 a 87 a mrna01828.1-v1.0-hybrid 582 A 582 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0062	88	150	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.586	90	148	IPR017877	Myb-like domain
CDD	cd12203	2.33E-28	90	155	No hit	No description
Pfam	PF13837	4.2E-21	90	176	No hit	No description
PROSITE profile	PS50090	6.946	490	554	IPR017877	Myb-like domain
SMART	SM00717	0.0065	494	556	IPR001005	SANT/Myb domain
CDD	cd12203	1.62E-30	496	561	No hit	No description
Pfam	PF13837	4.2E-23	496	583	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0007010	developmental stage	whole plant fruit ripening stage
PO:0007027	developmental stage	whole plant fruit formation stage 70% to final size

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MQGGGGGTQS HYGVVVSSAA EASTAAAPSM AAEAADQAHV VEEASPISSR PPAGGAISAV 60 NLDELMTLSG AAADVAADQG GGGGGGSGGN RWPRQETLAL LKIRSEMDVA FRDATLKGPL 120 WEDVSRKLAE LGYKRNAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SELEALHGSP 180 SPNVSASPPV HVTTAAAAPV SIGFGSISNP MPISSFRMTG GNTSTVPIMS TQATGAIPIM 240 PSSQPPLPAS TAAPMDINFS SNSSSSSHGE DEDYEDDDEV AGEPPANTSR KRKRGTSSRE 300 SGGSTRRMME FFEILMKQVM QKQETMQQRF LEVIEKREQD RNIREEAWKR QEMARLTREH 360 ELMTQERAIS ASRDAAIIAF LQKITGQTIQ LPPPLNVHNA PPPPVPPSVS VHVTPVSAPP 420 PPLAQQQSLH QVHQHQPQQQ TPPTQISRHQ IRTSIPPTPS ANQTEVVMAV PEQQVAQSQE 480 IVVGSGGGFE ATTSSSRWPK AEVLALIKLR SGLETRYQEA GPKGPLWEEI SAGMQRMGYK 540 RNPKRCKEKW ENINKYFKKV KESNKVRPED AKTCPYFHEL DALYRKRILG GGPSGGSSSS 600 LGNQTVQQQP QQAPPQPKLD SAAQGTVANT QQTQGTVAAT DQSVNKSGDD SPNLQKNLFG 660 DAPEEAAKKP EDIVKELMGQ QQQHHHQVLN QQGVQQQLVV EDYDRVEEGD SDVNLDQDEE 720 EDEEDEEDEE MDDESRKMDY KIEFQKQQNT GPSSNGGGNG APSFLAMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MQGGGGGTQS HYGVVVSSAA EASTAAAPSM AAEAADQAHV VEEASPISSR PPAGGAISAV  60
NLDELMTLSG AAADVAADQG GGGGGGSGGN RWPRQETLAL LKIRSEMDVA FRDATLKGPL  120
WEDVSRKLAE LGYKRNAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SELEALHGSP  180
SPNVSASPPV HVTTAAAAPV SIGFGSISNP MPISSFRMTG GNTSTVPIMS TQATGAIPIM  240
PSSQPPLPAS TAAPMDINFS SNSSSSSHGE DEDYEDDDEV AGEPPANTSR KRKRGTSSRE  300
SGGSTRRMME FFEILMKQVM QKQETMQQRF LEVIEKREQD RNIREEAWKR QEMARLTREH  360
ELMTQERAIS ASRDAAIIAF LQKITGQTIQ LPPPLNVHNA PPPPVPPSVS VHVTPVSAPP  420
PPLAQQQSLH QVHQHQPQQQ TPPTQISRHQ IRTSIPPTPS ANQTEVVMAV PEQQVAQSQE  480
IVVGSGGGFE ATTSSSRWPK AEVLALIKLR SGLETRYQEA GPKGPLWEEI SAGMQRMGYK  540
RNPKRCKEKW ENINKYFKKV KESNKVRPED AKTCPYFHEL DALYRKRILG GGPSGGSSSS  600
LGNQTVQQQP QQAPPQPKLD SAAQGTVANT QQTQGTVAAT DQSVNKSGDD SPNLQKNLFG  660
DAPEEAAKKP EDIVKELMGQ QQQHHHQVLN QQGVQQQLVV EDYDRVEEGD SDVNLDQDEE  720
EDEEDEEDEE MDDESRKMDY KIEFQKQQNT GPSSNGGGNG APSFLAMVQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	KRNAKKCKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna01828.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309494.1	0.0	PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A2H4NFV4	0.0	A0A2H4NFV4_FRAAN; Trihelix transcription factor GT-2F
STRING	XP_004309494.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	mrna01828.1-v1.0-hybrid