PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01788.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26051.4 Da    PI: 8.488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01788.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.1e-231866250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +i   +n qvtfskRr g++KKA+EL++LC++eva+i+fs+ +k y ++
  mrna01788.1-v1.0-hybrid 18 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPANKPYSFC 66
                             577899**************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.857969IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-32968IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-271081IPR002100Transcription factor, MADS-box
CDDcd002657.54E-341078No hitNo description
PRINTSPR004043.8E-181131IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKKSNRSSQG RQKIPIAKIA KRTNLQVTFS KRRSGLFKKA SELCTLCGVE VAIIVFSPAN  60
KPYSFCHPDV DSLIDRFLAR NPNFNMSLSD SCQQLGEAHK NATAHELNMQ LTRISNQVET  120
ERKLGESLDK MSKTSECWWE NPVDELGLDE LRILQAALEE LKKNLNEQTN RIWMESSNTT  180
NIANNSSSFF MTNNGHHLSK NSSPRSDQVG SDYIDIPRAY DFGFAGNIGL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-151097189Myocyte-specific enhancer factor 2A
3kov_B7e-151097189Myocyte-specific enhancer factor 2A
3kov_I7e-151097189Myocyte-specific enhancer factor 2A
3kov_J7e-151097189Myocyte-specific enhancer factor 2A
3p57_A7e-151097189Myocyte-specific enhancer factor 2A
3p57_B7e-151097189Myocyte-specific enhancer factor 2A
3p57_C7e-151097189Myocyte-specific enhancer factor 2A
3p57_D7e-151097189Myocyte-specific enhancer factor 2A
3p57_I7e-151097189Myocyte-specific enhancer factor 2A
3p57_J7e-151097189Myocyte-specific enhancer factor 2A
5f28_A6e-151095288MEF2C
5f28_B6e-151095288MEF2C
5f28_C6e-151095288MEF2C
5f28_D6e-151095288MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01788.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292056.11e-174PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU43e-53AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A2P6PJW31e-146A0A2P6PJW3_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004292056.11e-173(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-55AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]