PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01678.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34948.5 Da    PI: 10.1177
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01678.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind368.31.4e-11213101301
                GAGA_bind   1 mdddgsre.rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalae 69 
                              mdd  +++ r+k+ yy+              ++ ++l   +++++ms+iaerda+irern+a+sek++a+a+rd+a+ qrd+a+++
  mrna01678.1-v1.0-hybrid   1 MDDGRHENgRHKPdYYRgapspwnmtaqqqvKEpNALV--MNKKIMSIIAERDAAIRERNAAISEKNEALAARDEALRQRDEAFSQ 84 
                              899999999****9999********9987663345666..99******************************************** PP

                GAGA_bind  70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                              r+ al+erdn+++a   ++ns+  + p g ++ +g+k ++   + +  +++d ++ +++  ++ea+pi+    ea +++++k++++
  mrna01678.1-v1.0-hybrid  85 RDTALMERDNAFAAFHIRDNSM--NFPLGGGAQRGSKRMHYPSH-HPVNMADGPYSTKDVPITEAFPISVLSAEAIKSRQTKRSKQ 167
                              *****************99995..5678999999***9996554.779**********************9999999999998888 PP

                GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
                              +k  +++k ++kk  +e+ +++ ++++   + ++e++++dl+ln vs+De+t+PvPvCsCtG++rqCYkWGnGGWqS+CCtt++S+
  mrna01678.1-v1.0-hybrid 168 NKASRASKPSRKKV-GEDLNRQASTDG--IKYRSEWDTQDLGLNLVSFDETTMPVPVCSCTGMPRQCYKWGNGGWQSSCCTTNMSM 250
                              88888887777666.667777777777..569****************************************************** PP

                GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++ti+
  mrna01678.1-v1.0-hybrid 251 YPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSVPLDLKEYWARHGTNRYITIK 310
                              ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.2E-1491310IPR010409GAGA-binding transcriptional activator
PfamPF062176.2E-1011310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDDGRHENGR HKPDYYRGAP SPWNMTAQQQ VKEPNALVMN KKIMSIIAER DAAIRERNAA  60
ISEKNEALAA RDEALRQRDE AFSQRDTALM ERDNAFAAFH IRDNSMNFPL GGGAQRGSKR  120
MHYPSHHPVN MADGPYSTKD VPITEAFPIS VLSAEAIKSR QTKRSKQNKA SRASKPSRKK  180
VGEDLNRQAS TDGIKYRSEW DTQDLGLNLV SFDETTMPVP VCSCTGMPRQ CYKWGNGGWQ  240
SSCCTTNMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR LAAEGHDLSV PLDLKEYWAR  300
HGTNRYITIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01678.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290338.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_011458302.10.0PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-135BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2P6PQ670.0A0A2P6PQ67_ROSCH; Putative transcription factor GAGA-Binding-like family
STRINGXP_004290338.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-135basic pentacysteine 4