PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01621.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 213aa    MW: 23958.6 Da    PI: 6.6003
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01621.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.7e-08343438
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                              +C+ +++ e++ fC  ++  lC+ C    H+       H+
  mrna01621.1-v1.0-hybrid  3 IRCNFCDKAEATVFCSADEAALCDVCDRRVHHAnklaskHK 43
                             58**************************9964436666665 PP
2zf-B_box23.41.2e-075593339
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                              + C+ ++e +  lfC++++  +C++C  ++Hk   Ht+
  mrna01621.1-v1.0-hybrid 55 SPQCDICQERRGFLFCQEDRAIFCRECDNSIHKAneHTR 93
                             689*******9*********************8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
PfamPF006431.5E-6343IPR000315B-box-type zinc finger
CDDcd000212.63E-6347No hitNo description
SMARTSM003364.7E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.69853100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1353100IPR000315B-box-type zinc finger
PfamPF006438.0E-65593IPR000315B-box-type zinc finger
CDDcd000214.19E-856100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKIRCNFCDK AEATVFCSAD EAALCDVCDR RVHHANKLAS KHKRFFLLQP TCKDSPQCDI  60
CQERRGFLFC QEDRAIFCRE CDNSIHKANE HTRKHNRFLL TGVKLSADST QYPPSSSSCS  120
FSNEVVITNS TDHARVASKS STKRPRTGSN EQTSSYKVEE NCSLSDNGSV SSTNSISEYL  180
MGDQITEWRV EDLLDVSFDF DSFYEAKSAP YI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01621.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292420.11e-157PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM74e-59BBX20_ARATH; B-box zinc finger protein 20
SwissprotQ9LQZ75e-59BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A2P6PPU01e-123A0A2P6PPU0_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004292420.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-54salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]
  4. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  5. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  6. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  7. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  8. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]