PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01615.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 386aa    MW: 43428.3 Da    PI: 9.625
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01615.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702176.99.6e-55211775153
                   DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskk 82 
                              +++C+dCGn+akk+C+++RCRtCCk++gf+C+thvkstWvp +kr+  ++q+++    +++++          + skr r+  ++ 
  mrna01615.1-v1.0-hybrid  21 RSRCEDCGNKAKKECVYMRCRTCCKNKGFQCQTHVKSTWVPLYKRSLLHEQQHSYDDYHQQQRlavdqghvFINPSKRLRQ--HNP 104
                              579******************************************987776666655555554566665333334444444..455 PP

                   DUF702  83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153
                               s+++     ++  + + e++++P+ev+++a f+ vrvss+dd  + +++aYqt+v+igGhvf+GiLydqG++
  mrna01615.1-v1.0-hybrid 105 CSSSAVNLSMEGLDRDHQEANNFPAEVNTMAKFQGVRVSSMDDmvDLDQYAYQTSVTIGGHVFRGILYDQGPA 177
                              5555555555677788899999*********************766689**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.8E-5222176IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-262465IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.7E-21127176IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVRLRQGGGG GGGQGLTMGS RSRCEDCGNK AKKECVYMRC RTCCKNKGFQ CQTHVKSTWV  60
PLYKRSLLHE QQHSYDDYHQ QQRLAVDQGH VFINPSKRLR QHNPCSSSAV NLSMEGLDRD  120
HQEANNFPAE VNTMAKFQGV RVSSMDDMVD LDQYAYQTSV TIGGHVFRGI LYDQGPAVHQ  180
MSCYTTSASA ADQPHLPTSF SYQLVNPFNS SMPAASQLRM NMDGSDHFSG HRRGAALLSS  240
DDKKALSKES TVNLAEPLRA PDLALSLKLG EAKTYLSDAN QRPRPERTLN SLSLFKNPCP  300
EPKIILVKST NFREKRRKER KRDLSEFIYK RDKAGATFVK SANFHMKVLH CYSARNRWSI  360
VMLLFVDFHH LVDVSLKLAQ AVYDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01615.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458269.11e-153PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1
TrEMBLA0A2P6PPR91e-113A0A2P6PPR9_ROSCH; Putative transcription factor STY-LRP1 family
STRINGXP_004292419.11e-153(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-41SHI-related sequence3