PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01615.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SRS | ||||||||
Protein Properties | Length: 386aa MW: 43428.3 Da PI: 9.625 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 176.9 | 9.6e-55 | 21 | 177 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskk 82 +++C+dCGn+akk+C+++RCRtCCk++gf+C+thvkstWvp +kr+ ++q+++ +++++ + skr r+ ++ mrna01615.1-v1.0-hybrid 21 RSRCEDCGNKAKKECVYMRCRTCCKNKGFQCQTHVKSTWVPLYKRSLLHEQQHSYDDYHQQQRlavdqghvFINPSKRLRQ--HNP 104 579******************************************987776666655555554566665333334444444..455 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 s+++ ++ + + e++++P+ev+++a f+ vrvss+dd + +++aYqt+v+igGhvf+GiLydqG++ mrna01615.1-v1.0-hybrid 105 CSSSAVNLSMEGLDRDHQEANNFPAEVNTMAKFQGVRVSSMDDmvDLDQYAYQTSVTIGGHVFRGILYDQGPA 177 5555555555677788899999*********************766689**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.8E-52 | 22 | 176 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.0E-26 | 24 | 65 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.7E-21 | 127 | 176 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MVRLRQGGGG GGGQGLTMGS RSRCEDCGNK AKKECVYMRC RTCCKNKGFQ CQTHVKSTWV 60 PLYKRSLLHE QQHSYDDYHQ QQRLAVDQGH VFINPSKRLR QHNPCSSSAV NLSMEGLDRD 120 HQEANNFPAE VNTMAKFQGV RVSSMDDMVD LDQYAYQTSV TIGGHVFRGI LYDQGPAVHQ 180 MSCYTTSASA ADQPHLPTSF SYQLVNPFNS SMPAASQLRM NMDGSDHFSG HRRGAALLSS 240 DDKKALSKES TVNLAEPLRA PDLALSLKLG EAKTYLSDAN QRPRPERTLN SLSLFKNPCP 300 EPKIILVKST NFREKRRKER KRDLSEFIYK RDKAGATFVK SANFHMKVLH CYSARNRWSI 360 VMLLFVDFHH LVDVSLKLAQ AVYDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01615.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458269.1 | 1e-153 | PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1 | ||||
TrEMBL | A0A2P6PPR9 | 1e-113 | A0A2P6PPR9_ROSCH; Putative transcription factor STY-LRP1 family | ||||
STRING | XP_004292419.1 | 1e-153 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 2e-41 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | mrna01615.1-v1.0-hybrid |