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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | mrna01536.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 222aa MW: 24528.6 Da PI: 9.8979 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 52.8 | 1.3e-16 | 33 | 107 | 1 | 79 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79
kfYn+YAk++GFs+r +++ +sk+ + ++++vC+k+g+++ e +k r+r ++gC+a++ v ++k +g+++v+
mrna01536.1-v1.0-hybrid 33 KFYNRYAKDAGFSTRSHTTATSKDGTLLLRKEYVCYKQGNSKVEGEK-----RKRGLPKVGCDARIAVVRKKeSGRYVVS 107
6***************************************9998877.....999***********98888769999886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 8.7E-14 | 33 | 107 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 222 aa Download sequence Send to blast |
MESEDDQVYI PQVKIELKPR LHQEFETVDD VAKFYNRYAK DAGFSTRSHT TATSKDGTLL 60 LRKEYVCYKQ GNSKVEGEKR KRGLPKVGCD ARIAVVRKKE SGRYVVSVGQ NAIVLGAKSG 120 SIQHTFNEPN QVRAKGCGRR LKKGKEKKKV KVKDNQGRQC HGCGLFGQSH DKRNCPTLHG 180 KHVVNKDGDS SSSSMQDGDS SSTSMQDEDG CSSPGKFRCI E* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna01536.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G10240.1 | 6e-11 | FAR1-related sequence 11 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna01536.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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