PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01364.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 25553.1 Da PI: 10.347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.8 | 4.1e-27 | 12 | 175 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknra..tk 79 lp+G+rF+Ptdeelvv+yLk+kv+g +l++ ++i++ + y ++P++Lp+ + ++ ++ yfF +++ +y+ + ++ +ra + mrna01364.1-v1.0-hybrid 12 LPVGYRFDPTDEELVVYYLKRKVHGLPLPA-SIIPDYnsNYYLAHPSHLPMPLGKTMQKRYFFYNSKDNYQsdnNRSNYKRAaaAG 96 799***************************.7899884456777******766666667788877777777333233445542255 PP NAM 80 sgyWkatgkdkevlsk........kgel......vglkktLvfy..................kgrapkgektdWvmheyrl 128 g+W++ gk+k+++++ + + ++ktLvf+ +++ + +++ +W+mhey+l mrna01364.1-v1.0-hybrid 97 CGFWRSIGKEKQIVDTtcsdqcacS--QaqlaavLAVRKTLVFFgshgrkkktthhhryryqHQNGSLSTSPRWFMHEYHL 175 899***********98766555541..056677799********88777766666655533212333334778******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-30 | 11 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.236 | 12 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-19 | 13 | 175 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNGGGGGGAK MLPVGYRFDP TDEELVVYYL KRKVHGLPLP ASIIPDYNSN YYLAHPSHLP 60 MPLGKTMQKR YFFYNSKDNY QSDNNRSNYK RAAAAGCGFW RSIGKEKQIV DTTCSDQCAC 120 SQAQLAAVLA VRKTLVFFGS HGRKKKTTHH HRYRYQHQNG SLSTSPRWFM HEYHLRGSEV 180 LGNNWVLCSV FQKRRKLTSK KRGRTSALDN IGSCGHLPKP SNMFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-14 | 12 | 194 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-14 | 12 | 194 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-14 | 12 | 194 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-14 | 12 | 194 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-14 | 12 | 194 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-14 | 12 | 194 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-14 | 12 | 194 | 17 | 166 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01364.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306314.1 | 1e-171 | PREDICTED: protein SOMBRERO-like | ||||
TrEMBL | A0A2P6S6J8 | 1e-114 | A0A2P6S6J8_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004306314.1 | 1e-170 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 3e-27 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | mrna01364.1-v1.0-hybrid |