PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01340.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 209aa    MW: 22933.2 Da    PI: 9.2206
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01340.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32124182159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK vk ++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H h+
  mrna01340.1-v1.0-hybrid 124 LDDGYRWRKYGQKAVKANRFPRSYYRCTYEGCNVKKQVQRLSKDEGIVVTTYEGMHSHP 182
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-33109182IPR003657WRKY domain
SuperFamilySSF1182901.44E-28116183IPR003657WRKY domain
PROSITE profilePS5081129.746119184IPR003657WRKY domain
SMARTSM007745.7E-37124183IPR003657WRKY domain
PfamPF031066.2E-26125182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MFFPGSSSSA SSSSSMAAFS SPNMGSPQVL LYSSSGTANY GGDDRSSSIS RHSLLGSAMG  60
TENHAANGGR QLAVKHDDDD HYSDDRAEHH DQSPAAADNS SGKMKKKTRK PKYAFQTRSQ  120
VDILDDGYRW RKYGQKAVKA NRFPRSYYRC TYEGCNVKKQ VQRLSKDEGI VVTTYEGMHS  180
HPIDKPNSDN FEHILSQMQL ANHTGQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27114181774Probable WRKY transcription factor 4
2lex_A1e-27114181774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01340.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304530.11e-156PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A2H4G3691e-154A0A2H4G369_FRAVE; WRKY transcription factor 50
STRINGXP_004304530.11e-155(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-52WRKY DNA-binding protein 75