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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna01286.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | LBD | ||||||||
| Protein Properties | Length: 287aa MW: 32043.7 Da PI: 6.0833 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 126.3 | 1.4e-39 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
aCaaCk++rr+C+kdC lap+fpa+q k+f+n+h+l+G+sn++k+lk++ + ++e+am+s++ye+++ra+ Pv G++g+i++l+ q
mrna01286.1-v1.0-hybrid 10 ACAACKYQRRRCTKDCELAPHFPADQLKQFQNAHRLYGVSNIMKVLKQTGPGKKEEAMRSIIYESNMRAKFPVTGCMGIINQLTFQ 95
7************************************************************************************* PP
DUF260 87 leqlkaelallkee 100
l+q+ +el +++++
mrna01286.1-v1.0-hybrid 96 LQQAYEELRYVRSH 109
********999876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 24.321 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 4.6E-37 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 287 aa Download sequence Send to blast |
MTIKGGTSQA CAACKYQRRR CTKDCELAPH FPADQLKQFQ NAHRLYGVSN IMKVLKQTGP 60 GKKEEAMRSI IYESNMRAKF PVTGCMGIIN QLTFQLQQAY EELRYVRSHL AICRDQCQYQ 120 YNSPTCPSSQ LQLGLQTNDH EALQLYQQQY QYHQYNSAAG SSGGGGGGMS EYLANGINGL 180 YIDENDSVVK PLRVQQFYYG NNNVDAVAVQ HNLMTSQGFP IQQEMDVPHD YDDIPFDTIA 240 DDRQSYIESK EACESSAESA FKGTQSLEHV SQNDLKSAAA FFSLTS* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 1e-23 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 1e-23 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna01286.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011466249.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
| TrEMBL | A0A2P6S4T1 | 1e-176 | A0A2P6S4T1_ROSCH; Putative transcription factor AS2-LOB family | ||||
| STRING | XP_004302364.1 | 0.0 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4415 | 29 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G47870.1 | 1e-40 | LOB domain-containing protein 27 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna01286.1-v1.0-hybrid |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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