PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01262.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 421aa    MW: 47428.7 Da    PI: 6.7387
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01262.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-1573132155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  mrna01262.1-v1.0-hybrid  73 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 132
                              789******************888855555447*************************98 PP
2AP252.21.5e-16175226155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  mrna01262.1-v1.0-hybrid 175 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 226
                              89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1273132IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1673142IPR016177DNA-binding domain
CDDcd000182.38E-1973142No hitNo description
SMARTSM003801.7E-2474146IPR001471AP2/ERF domain
PROSITE profilePS5103219.58574140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1574141IPR001471AP2/ERF domain
PRINTSPR003673.2E-57586IPR001471AP2/ERF domain
PfamPF008475.4E-12175226IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18175236IPR016177DNA-binding domain
CDDcd000189.97E-25175236No hitNo description
SMARTSM003801.6E-26176240IPR001471AP2/ERF domain
PROSITE profilePS5103218.953176234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18176235IPR001471AP2/ERF domain
PRINTSPR003673.2E-5216236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDQQLMMVKN EETPAGRRRL SAADREANQA ARCVKRRRRD PPAVIVDITK TELPLPEKPA  60
DPASVAATTK RSSRFRGVSR HRWTGRFEAH LWDKLSWNVT QKKKGKQVYL GAYDEEESAA  120
RAYDLAALKY WGTSTFTNFP ISEYEKEIEI MQSVSKEEYL ASLRRKSSGF SRGVSKYRGV  180
ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR  240
WLKPKVDSTI SAQELETVAE PENMPFMASN YIPAEESSLS QINPFASDYL NSPRKQEVSL  300
SNVPLNTISK SSSPTALGLL LQSSIFRELV QKNSNYSEDE STDGEDQKNH AHGGSDDEYG  360
GLFSYDQIGA NSSLVSSSNE ESIELQEREL LHSPWNNFTS TMLLNQTTKA DASESLFFFS  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11638RRRLSAADREANQAARCVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01262.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304943.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q8TD140.0A0A3Q8TD14_FRAAN; Transcription factor AP211
STRINGXP_004304943.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-96AP2 family protein