PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna01256.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 492aa MW: 53103.3 Da PI: 7.7129

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna01256.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.7e-30	206	263	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ mrna01256.1-v1.0-hybrid 206 DGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 263 9************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-31	190	265	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-27	198	265	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	199	265	IPR003657	WRKY domain
SMART	SM00774	6.7E-37	204	264	IPR003657	WRKY domain
Pfam	PF03106	5.2E-27	206	263	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MPNSDSTAAA AVGTKVESFG YQEGQENYEL VNAKAEMSEV REENARLKKT LEHMTKDYQS 60 LQLRFFDILK QESHSKKATM SATTSHVEIE EPHDQLLSLC LGRSPRDPKN VSDEGKLVQA 120 DHHQDSKANL TLGLGSKLQL PTELVLSGPI PETSSEEPKE SEASPSSTKT PKTIRNEDDD 180 ASQQANAAKR ARVSVRARCD TPTMIDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK 240 QVQRCIDDMS ILITTYEGTH NHPLPMTATS MASTTSAAAS MLLSGSLTSQ LPGLGSSNGL 300 GFGLFDNSRQ QLYMPKLSSS PLFPTVTLDL TSSPSPSSNQ YCTFPPSLSF CSSESNSNLP 360 PSWGNVYPRF GTQFDRKNQE CFQPNHQASS QVSLTETLTK AITSDPNFKS VIAVALSSMV 420 GGGAASYGSQ GIGERLGQHL TQTGKSRSSS IFNSLSSSDS QKGNLTLLQP PLPFPESKST 480 TSSPAIRDKS L*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MPNSDSTAAA AVGTKVESFG YQEGQENYEL VNAKAEMSEV REENARLKKT LEHMTKDYQS  60
LQLRFFDILK QESHSKKATM SATTSHVEIE EPHDQLLSLC LGRSPRDPKN VSDEGKLVQA  120
DHHQDSKANL TLGLGSKLQL PTELVLSGPI PETSSEEPKE SEASPSSTKT PKTIRNEDDD  180
ASQQANAAKR ARVSVRARCD TPTMIDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK  240
QVQRCIDDMS ILITTYEGTH NHPLPMTATS MASTTSAAAS MLLSGSLTSQ LPGLGSSNGL  300
GFGLFDNSRQ QLYMPKLSSS PLFPTVTLDL TSSPSPSSNQ YCTFPPSLSF CSSESNSNLP  360
PSWGNVYPRF GTQFDRKNQE CFQPNHQASS QVSLTETLTK AITSDPNFKS VIAVALSSMV  420
GGGAASYGSQ GIGERLGQHL TQTGKSRSSS IFNSLSSSDS QKGNLTLLQP PLPFPESKST  480
TSSPAIRDKS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	191	265	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna01256.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302348.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-105	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2P6S4R2	0.0	A0A2P6S4R2_ROSCH; Putative transcription factor WRKY family
STRING	XP_004302348.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-70	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	mrna01256.1-v1.0-hybrid

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]