PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01153.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 508aa    MW: 55385.8 Da    PI: 6.8095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01153.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-114874127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++++ C +++rtG C yG++C+F+H++
  mrna01153.1-v1.0-hybrid 48 PGEPDCIYYLRTGLCGYGSNCRFNHPK 74
                             5789*********************96 PP
2zf-CCCH38.42.1e-1292116327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C ++++tGtCkyG++CkF+H++
  mrna01153.1-v1.0-hybrid  92 QPDCGYYLKTGTCKYGSTCKFHHPR 116
                              789********************96 PP
3zf-CCCH37.93.1e-12139161527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               C++++rtG Ck+G+ CkF+H++
  mrna01153.1-v1.0-hybrid 139 SCPYYMRTGSCKFGPACKFHHPQ 161
                              6********************97 PP
4zf-CCCH39.11.3e-12280305227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++Cr+++ tGtCkyG+ Ck++H++
  mrna01153.1-v1.0-hybrid 280 DQPECRYYMNTGTCKYGAECKYHHPK 305
                              689*********************96 PP
5zf-CCCH32.71.2e-10322348127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C+++  +G+CkyG++C+F H++
  mrna01153.1-v1.0-hybrid 322 PGQPVCSNYIMYGICKYGPTCRFDHPF 348
                              5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5264775IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-64774IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69989117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-589116IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371135162IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145278306IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6278305IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5284305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497321349IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5321348IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5324350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4326347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPDTRQAQKN AAPNQSDGNV EEAFWQLTIN ENQDGGGVAQ SNLYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPKYASQAA QYSGELPERV GQPDCGYYLK TGTCKYGSTC KFHHPRDRRG  120
AGPVLFNVLG LPMHQEEKSC PYYMRTGSCK FGPACKFHHP QPPSLTTALP AFGSTGSSVV  180
PSSGVPYTGG LSAWSFPRAP YVAGPRIATP QPYMPAVVLS PPQGVLPAHG WNTYVGNLSP  240
VSSTSILGSN LTYNSRGQGE SASNGQVHLP SSPNLPQRPD QPECRYYMNT GTCKYGAECK  300
YHHPKERIAE SATNPLGLPS RPGQPVCSNY IMYGICKYGP TCRFDHPFME QSGNYSFGMP  360
MLVDPSPLSY PRSWIAPQGF ESSPSSISSK FPDQVQKPES EKYQNSETKV PEESPEQAAG  420
TSPPSPSSSE TVQDQSVEFS ENGAGQETLK FHHVLVGARC LGISNVPYDM RFETTYPSSI  480
LKEIPFTSVE DLTELSSTRV PFFKLLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01153.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304076.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A2P6S1X50.0A0A2P6S1X5_ROSCH; Putative transcription factor C3H family
STRINGXP_004304076.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-110C3H family protein