PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01152.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 228aa    MW: 24856.7 Da    PI: 8.4883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01152.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-204391355
                      AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  mrna01152.1-v1.0-hybrid 43 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 91
                             8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-134291IPR001471AP2/ERF domain
PROSITE profilePS5103222.8534299IPR001471AP2/ERF domain
SMARTSM003807.9E-3442105IPR001471AP2/ERF domain
CDDcd000184.49E-174298No hitNo description
SuperFamilySSF541711.18E-2143100IPR016177DNA-binding domain
PRINTSPR003672.8E-104354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-314399IPR001471AP2/ERF domain
PRINTSPR003672.8E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRRARATAGP ANQSPPSCKK PRAAAAPRAT PSSQQQQQPQ IRFRGVRKRP WGRFAAEIRD  60
PWKKTRVWLG TFDSAEDAAR AYDAAARSLR GPKAKTNFSL PCDPFYGGEF NDDAICSKID  120
VIQASRPTSS SLSSTVESFS GPRVNSGKPP PMKPTQRRPV YPVSPEDCHS DCDSSSSVVD  180
DGDDCVLTSS FRRVLPFDLN MPPPMDGFDF SSDNVDDDDL RATALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1942981471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01152.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304075.11e-163PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS81e-40ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A3Q8TD001e-161A0A3Q8TD00_FRAAN; Transcription factor ERF57
STRINGXP_004304075.11e-163(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-23ethylene responsive element binding factor 3