PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01098.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 326aa    MW: 35481.5 Da    PI: 7.5598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01098.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076115137123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  mrna01098.1-v1.0-hybrid 115 YECKTCNRTFPSFQALGGHRASH 137
                              99**********99999998887 PP
2zf-C2H213.50.00021211233123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs+   L  H+r+H
  mrna01098.1-v1.0-hybrid 211 HECSICGSEFSSGQALGGHMRRH 233
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-13114139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8114137No hitNo description
PROSITE profilePS5015710.658115142IPR007087Zinc finger, C2H2
SMARTSM003550.052115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8206233No hitNo description
PROSITE profilePS501579.764211233IPR007087Zinc finger, C2H2
PfamPF139121.0E-11211235IPR007087Zinc finger, C2H2
SMARTSM003550.02211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGQEEVQAV LSDHQQSQMM IIKGKRTKRQ RPMSPFGLAV TSSSSSACGG GHGGEEYGNS  60
FTSASYESTE EEEDMANCLI LLAQGCDVVP KQQTSPVHEA TGVSGHVSKA GFYVYECKTC  120
NRTFPSFQAL GGHRASHKKP KSVAAAMADQ EKKPAPIHFT TSASMDQEVE DSKQFVKKSS  180
PPPPPPPPPS TQPAVPIQIK GFQSNNKAKI HECSICGSEF SSGQALGGHM RRHRAIVANN  240
NTTTQVVGIG AAIDNNSTRS KQERSNILAL DLNLPAPEDH DHHHHHHHHH QQHQIHHQRD  300
SKFQFVPTQQ TSLVFNAPAL VDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01098.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8158563e-89GU815856.1 Fragaria x ananassa clone ChFaM130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294532.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6QGP91e-170A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294532.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-50C2H2 family protein