PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01068.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 21579.4 Da PI: 7.5528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.4e-05 | 79 | 118 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A++YI+ L mrna01068.1-v1.0-hybrid 79 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 118 6788889999999****9999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-10 | 68 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.655 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-12 | 71 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-4 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.24E-5 | 79 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNHYAEEPSE YPAERTETVK RDDKHTVMLY WNWEMFQGEE GIDVRKMTEH KRNPCSVEQS 60 SRTALTSKRH KTDLSMSTKE RKEKLGERIV ALQQLVSPYG KTDTASVLLE AMDYIRFLHE 120 QVKVLSAPYL QSTPTAKMQE LQSFSLRSRG LCLVPIDCTV GVAQSNGADI WAPIKTTSAK 180 FENVNSNSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01068.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309594.1 | 1e-111 | PREDICTED: transcription factor bHLH113 | ||||
Swissprot | Q7XJU2 | 5e-64 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2P6QU78 | 1e-100 | A0A2P6QU78_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004309594.1 | 1e-111 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna01068.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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