PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01023.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 269aa    MW: 30350.7 Da    PI: 4.8439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01023.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.33.4e-2461343128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgy 82 
                              +GfrFhPt+ elv ++L+++++  + ++  +v++  d y k+ePw +  ++ +    e +++yfF++r++ + tg+r nr++ sg+
  mrna01023.1-v1.0-hybrid   6 VGFRFHPTERELVGYFLRNRASMGSeFRPGTVVECRDFYgKTEPWVIWDSHGGpgldEGESLYFFTERHRLHGTGNRFNRKVGSGT 91 
                              7******************98877745554455555987578*****632222334355688************************ PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              W+a+    +v + +ge++g+k+ + + +g++p+ ++  W+m+e+++
  mrna01023.1-v1.0-hybrid  92 WSAQRP-LKVEQ-NGEVIGMKREFRYERGSHPD-QNNCWLMQEFEM 134
                              **9865.66777.999****************9.7889******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-273148IPR003441NAC domain
PROSITE profilePS5100525.2324160IPR003441NAC domain
PfamPF023653.8E-176133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQGFGVGFRF HPTERELVGY FLRNRASMGS EFRPGTVVEC RDFYGKTEPW VIWDSHGGPG  60
LDEGESLYFF TERHRLHGTG NRFNRKVGSG TWSAQRPLKV EQNGEVIGMK REFRYERGSH  120
PDQNNCWLMQ EFEMDVNDSL VLCTLRKKPS PAVVVAVQES NTTRKRNDPC GNDDSNHLKR  180
LRLDQPTSNS TAEVENLSHY DCEVVNVSNS VCVDYFKQWL QMVLDEDPIS DALLDECLGG  240
TSGLPSINDP SLFDITNDAN ADSFSLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01023.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6R6W08e-56A0A2P6R6W0_ROSCH; Putative transcription factor NAM family
STRINGXP_004292554.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-20vascular related NAC-domain protein 7