PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00920.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 483aa    MW: 54812 Da    PI: 4.7525
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00920.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2241e-07164209755
                      AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              r++  + rW A++       k  k  +lg+f+  eeAa+a++ a  k++g
  mrna00920.1-v1.0-hybrid 164 RRYGENARWQARLGKG----KDtKGLYLGSFDAQEEAARAYDVAVIKYRG 209
                              55556789****6663....236*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-1382142No hitNo description
SuperFamilySSF541712.29E-982141IPR016177DNA-binding domain
SMARTSM003803.4E-1083146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-883141IPR001471AP2/ERF domain
PROSITE profilePS5103212.82683140IPR001471AP2/ERF domain
PROSITE profilePS5103213.05159218IPR001471AP2/ERF domain
SMARTSM003802.0E-12163224IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-10168220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-10169218IPR001471AP2/ERF domain
CDDcd000188.44E-14169220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MTSDDLMNQG QNDSGSGTKF AEMKCKRRPT NKKCKQTFGE KSDNVLDQEK NIAAGSRLNS  60
VEVQRNCPPT KKDKKASGER SSRFRGVTRY PGHFEAFLWD NSDPQVKGKT GGFHEEEQAA  120
RAHDLASLKY WGKSTSLNFP VTDYEKEIEE MEEYTKKDYM LHIRRYGENA RWQARLGKGK  180
DTKGLYLGSF DAQEEAARAY DVAVIKYRGG WDAVTNFDIS NYDVQDILDN PYIPIEKGAS  240
KFIRRTAADD ILESRRTTNN GTVSQQHVDS SSSYKPDTTL VAPPSFESTV VQTLDQTLSY  300
SNPEQQYPFP SLNPNQDNEQ IQINQFPQDL QYFNTPNFEY DHLPFTINPS FHSWGNYGRN  360
ELIEPSLQFQ PILTTENHNF QNDNSQPHLL QNPSSSSSQF SQNPNCQREK PNVLSDLADL  420
QSGSDIREVP SSQEAVASFA MRGTDEISHD DCPNERNGIF SEVDFGLEEF ERFLMTIDTS  480
DF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835PTNKKCKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00920.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468665.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A3Q8TB380.0A0A3Q8TB38_FRAAN; Transcription factor AP213
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1650648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.19e-45AP2 family protein