PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna00920.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 483aa MW: 54812 Da PI: 4.7525 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24 | 1e-07 | 164 | 209 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 r++ + rW A++ k k +lg+f+ eeAa+a++ a k++g mrna00920.1-v1.0-hybrid 164 RRYGENARWQARLGKG----KDtKGLYLGSFDAQEEAARAYDVAVIKYRG 209 55556789****6663....236*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-13 | 82 | 142 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-9 | 82 | 141 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-10 | 83 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-8 | 83 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.826 | 83 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.05 | 159 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-12 | 163 | 224 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-10 | 168 | 220 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-10 | 169 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.44E-14 | 169 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 483 aa Download sequence Send to blast |
MTSDDLMNQG QNDSGSGTKF AEMKCKRRPT NKKCKQTFGE KSDNVLDQEK NIAAGSRLNS 60 VEVQRNCPPT KKDKKASGER SSRFRGVTRY PGHFEAFLWD NSDPQVKGKT GGFHEEEQAA 120 RAHDLASLKY WGKSTSLNFP VTDYEKEIEE MEEYTKKDYM LHIRRYGENA RWQARLGKGK 180 DTKGLYLGSF DAQEEAARAY DVAVIKYRGG WDAVTNFDIS NYDVQDILDN PYIPIEKGAS 240 KFIRRTAADD ILESRRTTNN GTVSQQHVDS SSSYKPDTTL VAPPSFESTV VQTLDQTLSY 300 SNPEQQYPFP SLNPNQDNEQ IQINQFPQDL QYFNTPNFEY DHLPFTINPS FHSWGNYGRN 360 ELIEPSLQFQ PILTTENHNF QNDNSQPHLL QNPSSSSSQF SQNPNCQREK PNVLSDLADL 420 QSGSDIREVP SSQEAVASFA MRGTDEISHD DCPNERNGIF SEVDFGLEEF ERFLMTIDTS 480 DF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 28 | 35 | PTNKKCKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna00920.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468665.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A3Q8TB38 | 0.0 | A0A3Q8TB38_FRAAN; Transcription factor AP213 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16506 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 9e-45 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna00920.1-v1.0-hybrid |