PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00738.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 332aa    MW: 35462.7 Da    PI: 10.0312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00738.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-1395139347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  mrna00738.1-v1.0-hybrid  95 AWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 139
                              7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.108.1E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.763520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.24288144IPR017930Myb domain
SuperFamilySSF466899.72E-1790144IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-1791142IPR006447Myb domain, plants
SMARTSM007173.9E-1092142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-1194139IPR009057Homeodomain-like
PfamPF002497.5E-1195139IPR001005SANT/Myb domain
CDDcd001673.94E-995140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSRTCSQCGN NGHNSRTCTE AAGGGAASPA ENGIMLFGVR LVTEQGNAFR KSASMNNLSQ  60
YDQLPLQDSN PDAGYASDDV VHASGNRRER KRGVAWTEEE HRLFLLGLQK VGKGDWRGIS  120
RNFVKTRTPT QVASHAQKYF LRRSNHNRRR RRSSLFDITT DTPSMNSLME EDLALHQEKS  180
AQLSLPVLPY PPPQSTSLGG NLIGGFPIST FPMTLSPVVL PVTGESSSSA ESTLALLGGA  240
PNPSNDVQQM VKGATTTRKV VRPIPVPPSA KMAGLNLNNK YSPSRVAQEP LPLSLKLSNT  300
ASSEEQSPTA SGHSSAFQAM SSGTDSIISV A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00738.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285490.0FR828549.1 Rosa rugosa mRNA for putative MYB transcription factor (myb16 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297686.20.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A2P6R4C40.0A0A2P6R4C4_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBLF2QKW90.0F2QKW9_ROSRU; Putative MYB transcription factor
STRINGXP_004297686.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.24e-73MYB_related family protein