PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00631.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 465aa    MW: 52734.2 Da    PI: 6.7787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00631.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08280325555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +  +Er+RR+ri+++   Lr l+Pk      +K++ a+i   A+eYIk+Lq
  mrna00631.1-v1.0-hybrid 280 NLNAERKRRNRIKEGELALRALVPKI-----TKMDRASIPADAIEYIKELQ 325
                              5568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-1514161IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.18E-11273329No hitNo description
SuperFamilySSF474591.57E-14274341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.075275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6278325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14281341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAMSLKRLER LMEEWLRPLV EAKQWDYCVV WKLGHDPTRF IKMVGCCCGG GYDYCANVKE  60
EEGAQVCRDG YLEHRIKTKA CVALAQLPDS MPLYSGVHTE VIISDQPRWI SNALDSNHPE  120
SHDSKGTRVL IPLLLSGLIE LFTTDNLPEN QEMLDLLMES FNANVNLKGS ANLDELHIDP  180
MKEKFLPKVC PRPQLTSRTQ STSCPSREGS SSGSNPSTEH RPFNLSSDQL PPYGYVMPSE  240
KSSRFRKPEF RDNLLKQQVV EKDNARGVGR TGSEHFRSKN LNAERKRRNR IKEGELALRA  300
LVPKITKMDR ASIPADAIEY IKELQQQVKE LEEELREMEE EDSANNEVDL HVSALDKNKR  360
GSSSLTCTDH KQISSIALKI PTEVHLEVYQ LSKKECLIKL FCEHNRGGFT RLIETMDCLG  420
LEVVDANVTT FDRNSLIILR VEANEDIQAK KLKDLLIKLT RGRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00631.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298568.20.0PREDICTED: transcription factor bHLH90
TrEMBLA0A2P6R4060.0A0A2P6R406_ROSCH; Putative transcription factor bHLH family
STRINGXP_004298568.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-43bHLH family protein