PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna00620.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 919aa MW: 101557 Da PI: 9.3972 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 317.9 | 3.2e-97 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalv 75 mddd+ + n+gyye + +k +lglqlm+s+ erd+k+ r+ ++ + + +++rd m+ +r++++++ mrna00620.1-v1.0-hybrid 1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPfiPGRDPPVMVSANGYHPRDcvvqdapvpMSNYMRESWISQ------ 78 999988889*****988..*******************9995555556888899*****999999999766699999999...... PP GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161 ++k+l++++++ +++v+++t+ +++ q + +++ ++++ e ++ ++ ++ ++ke +kkrq++ pk+ mrna00620.1-v1.0-hybrid 79 --RDKFLTMMPANP--------NYGVIPETSAAQHAMQ-----ILQPPPDISRDERVNRME---EPVVHKEGGPSKKRQNGGAPKA 146 ..789999999655........499******9997655.....556666655555444443...6778888899999999****** PP GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 +k kk++k +k++++++ +r+k kks ++v+ng+ lD+s++ +PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s mrna00620.1-v1.0-hybrid 147 PKVKKPRK----PKDNSNPAV--PRVKPAKKSFEVVINGIPLDISGISIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMS 226 **999999....444555555..789************************************************************ PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tkrrgaRiagrKmSqgafkk+LekLa+eGy+++np+DL++hWA+HGtnkfvtir mrna00620.1-v1.0-hybrid 227 TKRRGARIAGRKMSQGAFKKVLEKLASEGYNFANPIDLRTHWARHGTNKFVTIR 280 *****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 9.1E-161 | 1 | 280 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.3E-108 | 1 | 280 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF00854 | 1.4E-78 | 432 | 851 | IPR000109 | Proton-dependent oligopeptide transporter family |
SuperFamily | SSF103473 | 1.57E-18 | 474 | 575 | IPR020846 | Major facilitator superfamily domain |
SuperFamily | SSF103473 | 1.57E-18 | 653 | 893 | IPR020846 | Major facilitator superfamily domain |
Gene3D | G3DSA:1.20.1250.20 | 5.3E-6 | 751 | 893 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080055 | Biological Process | low-affinity nitrate transport | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0080054 | Molecular Function | low-affinity nitrate transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPFIP GRDPPVMVSA NGYHPRDCVV 60 QDAPVPMSNY MRESWISQRD KFLTMMPANP NYGVIPETSA AQHAMQILQP PPDISRDERV 120 NRMEEPVVHK EGGPSKKRQN GGAPKAPKVK KPRKPKDNSN PAVPRVKPAK KSFEVVINGI 180 PLDISGISIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS 240 QGAFKKVLEK LASEGYNFAN PIDLRTHWAR HGTNKFVTIR DSDDAVTTPL DRSETAASVR 300 RKPGGWKAMP YILGNDTLER LATFGLLANF MVYLTREVHL DQVSASNVIY IWYGVTNFAP 360 LLGAFVSDAY VGRFGTIAFG SFSLLLWPLS WTVVLGSQAT SIAPVTLFVL RYGDIMKSAK 420 YVCLCNLSNL SMVLRITGMA TLTMTTWLPE LHPPPCSGNQ QKLGQCLPPT KAQLGFLILG 480 LGFVSVGTGG IRPCSIPFGI DQFDPNTDDG KKGIKSFFNW YYATFTVVLL ITSTLVVYIQ 540 DKVSWSLGFG IPTVLMCGSI VLLFVGVRIY VHAKPQGSMF TSIAQVLVAA YKKRQLKLPD 600 DKAIDGSKLY DPPVKDLLIQ KLPPTNQIRF LNKAAIILEN DIKPDGCPVN KWRLCSVQQV 660 EDLKCVIKTM PIWASAIVSF TAMTQQATFT VSQALKLNRH LGQKFEIPAG SLIVISLLTI 720 GIFLPVYDRL LVPALRKVTK DEGGITVLQR IGIGCIFSVL AMLVAGFIEK ERRDMANLHP 780 HEPVSFMWLA PQLILMGLCE AFSVIGLLEF FNREFPDHIR SVGNALLSCS FAGSSYLSSV 840 LVTVVHRVTG THSKPDWLTN DINAGRLDLF YFLLAGIGFL NFFYFLFCAQ RYKYKGTVQK 900 EDDNNPCVTV ELGSTTTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a2n_A | 3e-87 | 282 | 908 | 8 | 586 | PROTEIN NRT1/ PTR FAMILY 6.3 |
5a2n_B | 3e-87 | 282 | 908 | 8 | 586 | PROTEIN NRT1/ PTR FAMILY 6.3 |
5a2o_A | 3e-87 | 282 | 908 | 8 | 586 | NITRATE TRANSPORTER 1.1 |
5a2o_B | 3e-87 | 282 | 908 | 8 | 586 | NITRATE TRANSPORTER 1.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport, but has a weak glucosinolate transport activity. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. {ECO:0000269|PubMed:19734434, ECO:0000269|PubMed:22864417}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna00620.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Expression increase during the light phase and decrease during the dark phase. {ECO:0000269|PubMed:19734434}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297809.1 | 0.0 | PREDICTED: protein NRT1/ PTR FAMILY 2.13-like | ||||
Swissprot | Q8RX77 | 0.0 | PTR21_ARATH; Protein NRT1/ PTR FAMILY 2.13 | ||||
TrEMBL | A0A2P6R4C9 | 0.0 | A0A2P6R4C9_ROSCH; Putative proton-dependent oligopeptide transporter family, major facilitator superfamily | ||||
STRING | XP_004297809.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 3e-97 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna00620.1-v1.0-hybrid |