PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00620.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BBR-BPC
Protein Properties Length: 919aa    MW: 101557 Da    PI: 9.3972
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00620.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind317.93.2e-9712801301
                GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalv 75 
                              mddd+ +  n+gyye +  +k +lglqlm+s+ erd+k+    r+  ++ + + +++rd         m+  +r++++++      
  mrna00620.1-v1.0-hybrid   1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPfiPGRDPPVMVSANGYHPRDcvvqdapvpMSNYMRESWISQ------ 78 
                              999988889*****988..*******************9995555556888899*****999999999766699999999...... PP

                GAGA_bind  76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                                ++k+l++++++         +++v+++t+ +++  q     + +++ ++++ e ++ ++   ++ ++ke   +kkrq++  pk+
  mrna00620.1-v1.0-hybrid  79 --RDKFLTMMPANP--------NYGVIPETSAAQHAMQ-----ILQPPPDISRDERVNRME---EPVVHKEGGPSKKRQNGGAPKA 146
                              ..789999999655........499******9997655.....556666655555444443...6778888899999999****** PP

                GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
                              +k kk++k    +k++++++   +r+k  kks ++v+ng+ lD+s++ +PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s
  mrna00620.1-v1.0-hybrid 147 PKVKKPRK----PKDNSNPAV--PRVKPAKKSFEVVINGIPLDISGISIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMS 226
                              **999999....444555555..789************************************************************ PP

                GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              tkrrgaRiagrKmSqgafkk+LekLa+eGy+++np+DL++hWA+HGtnkfvtir
  mrna00620.1-v1.0-hybrid 227 TKRRGARIAGRKMSQGAFKKVLEKLASEGYNFANPIDLRTHWARHGTNKFVTIR 280
                              *****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.1E-1611280IPR010409GAGA-binding transcriptional activator
PfamPF062174.3E-1081280IPR010409GAGA-binding transcriptional activator
PfamPF008541.4E-78432851IPR000109Proton-dependent oligopeptide transporter family
SuperFamilySSF1034731.57E-18474575IPR020846Major facilitator superfamily domain
SuperFamilySSF1034731.57E-18653893IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.205.3E-6751893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080055Biological Processlow-affinity nitrate transport
GO:0005886Cellular Componentplasma membrane
GO:0080054Molecular Functionlow-affinity nitrate transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPFIP GRDPPVMVSA NGYHPRDCVV  60
QDAPVPMSNY MRESWISQRD KFLTMMPANP NYGVIPETSA AQHAMQILQP PPDISRDERV  120
NRMEEPVVHK EGGPSKKRQN GGAPKAPKVK KPRKPKDNSN PAVPRVKPAK KSFEVVINGI  180
PLDISGISIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LASEGYNFAN PIDLRTHWAR HGTNKFVTIR DSDDAVTTPL DRSETAASVR  300
RKPGGWKAMP YILGNDTLER LATFGLLANF MVYLTREVHL DQVSASNVIY IWYGVTNFAP  360
LLGAFVSDAY VGRFGTIAFG SFSLLLWPLS WTVVLGSQAT SIAPVTLFVL RYGDIMKSAK  420
YVCLCNLSNL SMVLRITGMA TLTMTTWLPE LHPPPCSGNQ QKLGQCLPPT KAQLGFLILG  480
LGFVSVGTGG IRPCSIPFGI DQFDPNTDDG KKGIKSFFNW YYATFTVVLL ITSTLVVYIQ  540
DKVSWSLGFG IPTVLMCGSI VLLFVGVRIY VHAKPQGSMF TSIAQVLVAA YKKRQLKLPD  600
DKAIDGSKLY DPPVKDLLIQ KLPPTNQIRF LNKAAIILEN DIKPDGCPVN KWRLCSVQQV  660
EDLKCVIKTM PIWASAIVSF TAMTQQATFT VSQALKLNRH LGQKFEIPAG SLIVISLLTI  720
GIFLPVYDRL LVPALRKVTK DEGGITVLQR IGIGCIFSVL AMLVAGFIEK ERRDMANLHP  780
HEPVSFMWLA PQLILMGLCE AFSVIGLLEF FNREFPDHIR SVGNALLSCS FAGSSYLSSV  840
LVTVVHRVTG THSKPDWLTN DINAGRLDLF YFLLAGIGFL NFFYFLFCAQ RYKYKGTVQK  900
EDDNNPCVTV ELGSTTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a2n_A3e-872829088586PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B3e-872829088586PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A3e-872829088586NITRATE TRANSPORTER 1.1
5a2o_B3e-872829088586NITRATE TRANSPORTER 1.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLow-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport, but has a weak glucosinolate transport activity. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. {ECO:0000269|PubMed:19734434, ECO:0000269|PubMed:22864417}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00620.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Expression increase during the light phase and decrease during the dark phase. {ECO:0000269|PubMed:19734434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297809.10.0PREDICTED: protein NRT1/ PTR FAMILY 2.13-like
SwissprotQ8RX770.0PTR21_ARATH; Protein NRT1/ PTR FAMILY 2.13
TrEMBLA0A2P6R4C90.0A0A2P6R4C9_ROSCH; Putative proton-dependent oligopeptide transporter family, major facilitator superfamily
STRINGXP_004297809.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-97basic pentacysteine 2
Publications ? help Back to Top
  1. Scutt CP, et al.
    The identification of candidate genes for a reverse genetic analysis of development and function in the Arabidopsis gynoecium.
    Plant Physiol., 2003. 132(2): p. 653-65
    [PMID:12805595]
  2. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  3. Tung CW,Dwyer KG,Nasrallah ME,Nasrallah JB
    Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth.
    Plant Physiol., 2005. 138(2): p. 977-89
    [PMID:15894741]
  4. Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK
    Nitrate transporters and peptide transporters.
    FEBS Lett., 2007. 581(12): p. 2290-300
    [PMID:17481610]
  5. Fan SC,Lin CS,Hsu PK,Lin SH,Tsay YF
    The Arabidopsis nitrate transporter NRT1.7, expressed in phloem, is responsible for source-to-sink remobilization of nitrate.
    Plant Cell, 2009. 21(9): p. 2750-61
    [PMID:19734434]
  6. Li JY, et al.
    The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance.
    Plant Cell, 2010. 22(5): p. 1633-46
    [PMID:20501909]
  7. Plett D, et al.
    Dichotomy in the NRT gene families of dicots and grass species.
    PLoS ONE, 2010. 5(12): p. e15289
    [PMID:21151904]
  8. Nour-Eldin HH, et al.
    NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds.
    Nature, 2012. 488(7412): p. 531-4
    [PMID:22864417]
  9. Vilaine F, et al.
    Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis.
    Plant Cell, 2013. 25(5): p. 1689-708
    [PMID:23715470]
  10. Léran S, et al.
    A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.
    Trends Plant Sci., 2014. 19(1): p. 5-9
    [PMID:24055139]
  11. Liu W,Sun Q,Wang K,Du Q,Li WX
    Nitrogen Limitation Adaptation (NLA) is involved in source-to-sink remobilization of nitrate by mediating the degradation of NRT1.7 in Arabidopsis.
    New Phytol., 2017. 214(2): p. 734-744
    [PMID:28032637]