PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00618.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 598aa    MW: 66674.3 Da    PI: 7.9374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00618.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-06199221123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C++C++ F r  nL+ H r+H
  mrna00618.1-v1.0-hybrid 199 YVCEICNQGFQRDQNLQMHRRRH 221
                              9*********************9 PP
2zf-C2H2157.4e-05277299123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +C+k +  +s++k H++t+
  mrna00618.1-v1.0-hybrid 277 WVCDKCSKGYAVQSDYKAHLKTC 299
                              58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-5198221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-5198221No hitNo description
SMARTSM003550.0052199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97199221IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SMARTSM00355210241271IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001268298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-5272297No hitNo description
SMARTSM0035565277304IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MLFLLPGVIP DLPRRCWNEE EGRRDRDRRS VQQSQSELHD RSWWTSDRDL SGLLLHSNTV  60
VGGLRSSRGE ETASPALEWW RNGGNPSISF STPSDFACYC LVHVSSENLR EREGGQWTLT  120
PNSFHLMLAN NNHTNTTTAS SAAPSSSSDH HHHVFPPLEN GVPPPPTTHK RKRRPAGTPD  180
PDAEVVSLSP KTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR EIQDQVKKRV  240
FVCPEPSCLH HDPCHALGDL VGIKKHFRRK HSNHKQWVCD KCSKGYAVQS DYKAHLKTCG  300
TRGHSCDCGR VFSRVESFIE HQDTCSVRHV VRPELQALQP ATACSSRTAS STSPSSDGHF  360
SINNNNAPHP MPGLTVMPKP NEQPVVFIRS HEGHDGNPSP SNRHQQQQPQ EHEQEHMLEL  420
KLLPSSDAQT SPRNEEENYA TRLKLSIGGS SHSGDQNNES PRCSSREMNT NIGIGGGASW  480
EVARLKDIAS EELKLAMSEK AYAEEARREA KRQIEMAEVE FANAKRIRQQ AQAELQKAQL  540
LKEQSTKKVS SAIMQITCPS CKTHFHAGVG PSVGETTSSL GLSYMSSATT EGEGGEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17275325555Zinc finger protein JACKDAW
5b3h_F3e-17275325555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00618.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297807.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotQ9C9X71e-143IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2P6R4C50.0A0A2P6R4C5_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004297807.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-121indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]