PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00615.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25499.1 Da    PI: 7.6899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00615.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.2e-231561248
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             + en+sn+qvtfskRr g++KKA ELSvLC+a va+i+fs  gk + 
  mrna00615.1-v1.0-hybrid 15 KLENSSNKQVTFSKRRSGLFKKAGELSVLCGAHVAIIVFSGAGKAFC 61
                             679*************************************9999665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.446666IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-33665IPR002100Transcription factor, MADS-box
CDDcd002651.01E-35777No hitNo description
SuperFamilySSF554553.27E-28776IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-23828IPR002100Transcription factor, MADS-box
PfamPF003198.4E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-232843IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-234364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSKKTQGRKK IEIKKLENSS NKQVTFSKRR SGLFKKAGEL SVLCGAHVAI IVFSGAGKAF  60
CYGHPNVNAV LESYQHGLTS VVRADHDEAA GDLLVVECNK EYMEAEKEFQ DLKRKATEIK  120
QTANEKKNMM KAMNISEGFW WDEAVDMVMM DERDGEQYLK ALEEVRGKVA ARVHELKILN  180
GIMTKTGPSI PEVDHRLNHH MPFMTADTYF GNGQDVQFGS AYHDLGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16774269Myocyte-specific enhancer factor 2B
1tqe_Q1e-16774269Myocyte-specific enhancer factor 2B
1tqe_R1e-16774269Myocyte-specific enhancer factor 2B
1tqe_S1e-16774269Myocyte-specific enhancer factor 2B
6c9l_A1e-16774269Myocyte-specific enhancer factor 2B
6c9l_B1e-16774269Myocyte-specific enhancer factor 2B
6c9l_C1e-16774269Myocyte-specific enhancer factor 2B
6c9l_D1e-16774269Myocyte-specific enhancer factor 2B
6c9l_E1e-16774269Myocyte-specific enhancer factor 2B
6c9l_F1e-16774269Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00615.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463509.11e-171PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6R4D51e-117A0A2P6R4D5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004298640.11e-170(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-31AGAMOUS-like 62