PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00554.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 412aa    MW: 44774.9 Da    PI: 6.8847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00554.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.5e-08196263455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++iN ++  L+el+P +                   +++    a +L + +++++sLq
  mrna00554.1-v1.0-hybrid 196 SHSLAERARREKINARMKLLQELVPGCNkgallagvselkclgdPHSGQISGTALVLDEIINHVQSLQ 263
                              8*************************766777777777777775555555667777777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-6190267No hitNo description
SuperFamilySSF474594.97E-12190280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.713192262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-12196280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7198268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPIAGTVPG SALPGPDHEE PGLDTLQFRE EIQRLMTVPQ QENASSFTAL LELPPTQAME  60
LLHLSPEPPV SVGPLLKSSC VNPFNSSLMF PRDVELIQRA AKFSIFGGEQ SPEAVAAPSN  120
SGVNMEKVKS EPAETDSNPN SSSMETKNNQ RSSAKRKERE KKGKVSTKKS KTEVKEDADK  180
VPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCNKGALLAG VSELKCLGDP  240
HSGQISGTAL VLDEIINHVQ SLQRQVEFLS MRLATVDPRI DSNLDQLLAT ENFPSMGADN  300
SINSSGTLML FISQGQLKIL VSSPREEIDL RRYRVPQLLW IWGSPVTLGE VKEMGNVTSG  360
VFRGLLEERC GRQALEIGGP TEGVWRHNGK GGDSGSRFGM MAADGKVTLF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00554.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304317.10.0PREDICTED: transcription factor bHLH48
RefseqXP_011467993.10.0PREDICTED: transcription factor bHLH48
RefseqXP_011467994.10.0PREDICTED: transcription factor bHLH48
SwissprotQ3EAI17e-75BH060_ARATH; Transcription factor bHLH60
SwissprotQ8VZ022e-75BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2P6RDS21e-137A0A2P6RDS2_ROSCH; Putative transcription factor bHLH family
STRINGXP_004304317.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]