PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna00554.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 44774.9 Da PI: 6.8847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.5e-08 | 196 | 263 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +++ a +L + +++++sLq mrna00554.1-v1.0-hybrid 196 SHSLAERARREKINARMKLLQELVPGCNkgallagvselkclgdPHSGQISGTALVLDEIINHVQSLQ 263 8*************************766777777777777775555555667777777777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.72E-6 | 190 | 267 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-12 | 190 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.713 | 192 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-12 | 196 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-5 | 196 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 198 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MDPIAGTVPG SALPGPDHEE PGLDTLQFRE EIQRLMTVPQ QENASSFTAL LELPPTQAME 60 LLHLSPEPPV SVGPLLKSSC VNPFNSSLMF PRDVELIQRA AKFSIFGGEQ SPEAVAAPSN 120 SGVNMEKVKS EPAETDSNPN SSSMETKNNQ RSSAKRKERE KKGKVSTKKS KTEVKEDADK 180 VPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCNKGALLAG VSELKCLGDP 240 HSGQISGTAL VLDEIINHVQ SLQRQVEFLS MRLATVDPRI DSNLDQLLAT ENFPSMGADN 300 SINSSGTLML FISQGQLKIL VSSPREEIDL RRYRVPQLLW IWGSPVTLGE VKEMGNVTSG 360 VFRGLLEERC GRQALEIGGP TEGVWRHNGK GGDSGSRFGM MAADGKVTLF S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna00554.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304317.1 | 0.0 | PREDICTED: transcription factor bHLH48 | ||||
Refseq | XP_011467993.1 | 0.0 | PREDICTED: transcription factor bHLH48 | ||||
Refseq | XP_011467994.1 | 0.0 | PREDICTED: transcription factor bHLH48 | ||||
Swissprot | Q3EAI1 | 7e-75 | BH060_ARATH; Transcription factor bHLH60 | ||||
Swissprot | Q8VZ02 | 2e-75 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2P6RDS2 | 1e-137 | A0A2P6RDS2_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004304317.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 1e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna00554.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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