PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00545.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 412aa    MW: 45280.4 Da    PI: 6.8995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00545.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12339384655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  mrna00545.1-v1.0-hybrid 339 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 384
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.903.2E-54359No hitNo description
PROSITE profilePS5088815.294333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16336399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12337386No hitNo description
Gene3DG3DSA:4.10.280.103.1E-14338392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-12339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAAPAFLEAK AETENDGEKG FESDAVLYAC VCESGASSSE EFLEVESSET IGNVKAKIQV  60
GVSHYAKIFI RRQSRTTVQF PGIKSWQAEL CIMDSNTHLN LEHQPHQPNS GLLRFRSAPS  120
SLFAENNAAD LGVNKGASIE GSDSDRLFSR FVGYSHTNDS ESWPSSFQEF EDKSTVTEAA  180
VTASRISSQQ QGFAGLPPHY PRQNSFGSGN GSYGLVGSAA VDQHPQTKTV TSNLVRQSSS  240
PAGLFSNNSI QNGFPFGAWN DPSNFAENLD GMRRDQDTDQ KLFSAPQNGD LGNRVHILSH  300
HLSLPKNSAE VAMEKFLQLQ DSVPCKVRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV  360
PNMDKQTNTA DMLDLAVDYI KELQKQFKSL SDVRANCKCL SMQKPVQNQI V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00545.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304314.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR31e-104BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2P6RDQ60.0A0A2P6RDQ6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004304314.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]