PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00517.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 537aa    MW: 60527.8 Da    PI: 7.175
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00517.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.7e-11243282544
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                              k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  mrna00517.1-v1.0-hybrid 243 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 282
                              7789************************876666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-8236285No hitNo description
SMARTSM003385.0E-8239311IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289241285IPR004827Basic-leucine zipper domain
PfamPF001702.5E-8243283IPR004827Basic-leucine zipper domain
CDDcd147088.51E-23243295No hitNo description
SuperFamilySSF579595.87E-7243285No hitNo description
PROSITE patternPS000360246261IPR004827Basic-leucine zipper domain
PfamPF141441.1E-32333407IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGFSRTFEEA EERAGEQHRL ETKLASFMAS SLQGNQLDPQ QQQQQQQEHH HQSHHQIQNH  60
HHHQQQQQQQ QQQQQQQQHH HEIQYATMQP SSSNIPSVNF IGSSKDSGAY DLGELDQALF  120
LYLDGQQQEH HHHHQAPHHV QDQRHQTSSG MRPPTLNIFP SQPMHVEPSS TKGVSTAGIV  180
SSATSGSKRP SEPSMELANP RKIDAAAPSG PPEPAKTIKR EGNRKGPTTS SSEQEGPKTP  240
DPKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIKLTQLE QELQRARTQG IFFGGGLVGA  300
EQGVPVGINN ISSDAAVFDI EYARWLEEHH RLMCELRAAV QEHLPENELR LFVDNCLAHY  360
DEVMNLKSMV AKTDVFHIFS GMWKTPAERC FMWMGGFRPS EVIKIIVTQI EPLTEQQLMA  420
ICSLQQSTSE AEDALTQGLE ALNQSLSDTI ASDSLSMPPN MANYMGQMAL AMNKLSTLEG  480
FVRQADNLRL QTIHRLQTLL TTRQSARCLL AIAEYFHRLR ALSSLWMGRP RQDHQG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00517.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309443.10.0PREDICTED: transcription factor HBP-1b(c38)
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2P6RDP20.0A0A2P6RDP2_ROSCH; Putative transcription factor bZIP family
STRINGXP_004309443.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein