PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna00393.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 321aa MW: 35828.5 Da PI: 9.2185

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna00393.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	245	296	5	52
CHHHCHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk.....aeieeLeekvkeLeaeNkaLkkeleel 52 +r++r++kNRe+A rsR+RK+ a++ eLe kv Le+eN++L+k+ +el mrna00393.1-v1.0-hybrid 245 RRQKRMIKNRESAARSRARKQrklqqAYTTELEIKVSRLEEENERLRKQ-KEL 296 79****************73333367889**************64.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-12	234	297	No hit	No description
SMART	SM00338	3.6E-6	241	314	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.64E-21	245	304	No hit	No description
SuperFamily	SSF57959	9.38E-7	245	295	No hit	No description
Pfam	PF00170	2.7E-7	245	294	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	248	263	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGSQGGADGN CKQSQFQPLT RQNSIYNLTL DEVQNQLGDL GKPLSSMNLD ELLKSVWSAE 60 ANQTMGMDIE GTAMVNQASL QRQASLSLTS ALSKKTVDEV WRDIQQSKDN EEKRSRERQP 120 TLGEMTLEDF LVKAGVVAEA SDKKNTGGPL VGVDANVASQ FPQSQWLQYP HPQYQHPQQS 180 MMGVYIPSQP IPPPMHVGAG AVMDVPYSDN QLAMPSPLMG TLSDTQTPGR KRGNPEDIVE 240 KTVERRQKRM IKNRESAARS RARKQRKLQQ AYTTELEIKV SRLEEENERL RKQKELEKVL 300 PSAPPPEPKY QLRRTTSAPF *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna00393.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468749.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	1e-103	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2P6SBC6	0.0	A0A2P6SBC6_ROSCH; Putative transcription factor bZIP family
STRING	XP_004306446.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-86	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	mrna00393.1-v1.0-hybrid

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]