PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna00378.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 828aa MW: 93560.5 Da PI: 6.1623

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna00378.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.9	1.9e-14	59	133	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y++YA+ +GFs+ + + +++k +g i++ +f Cs+e +r+++ ++ C+a+l+v++++ ++w+ tk+ ++HnH mrna00378.1-v1.0-hybrid 59 LYDAYARCAGFSTHVGQFTRNKPDGPIVTWEFACSREVFRKKNVES--------------CNAMLRVERKDANTWVATKFIEDHNH 130 69*************************************99887..............************************ PP FAR1 88 ela 90 ++ mrna00378.1-v1.0-hybrid 131 SME 133 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-11	59	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	265	357	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-10	531	576	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.214	542	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-7	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MDSEIFLDVE AEDRESDKGV KQNANDNFAG REIITQDEDG NTKPYVGMEF ESEDAAKALY 60 DAYARCAGFS THVGQFTRNK PDGPIVTWEF ACSREVFRKK NVESCNAMLR VERKDANTWV 120 ATKFIEDHNH SMESPNKVHY LRPRRHFAGA AKNTAETLDV SSDAYVSMDG NHAPYEPNRG 180 GRSVSPVEPN PPARNVAPIN YTGPSSRKRT LGRDAQNLLN YFKKMQAENP GFYYAIQLDD 240 ENRMTNVFWT DARSRTTYNY FGDAVIFDTM YRPNQYQVPF APFTGVNHHG QMVLFGCALL 300 LDESESSFTW LFKTWLSAMN DRPPISITTD QDRAIQVAVA QVFPDTRHCI CKWHILREGQ 360 ERLAHIYLAN PSFYGELYSC INFSEKIEDF ESSWLSLLDR YDLRRNDWLQ AVYNARKQWA 420 PVYFRGTFFA AISSNQGVRS FFDGYVNQQT SIPLFFKQYE RALEHALEKE IEADYDTICT 480 TPVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANR IDEDGLVSKY RVAKYEHDDK 540 AYIVELNVSE MKASCSCQMF EHAGILCRHI LTVFTVTNVL TLPSQYILKR WTRNAKSWVG 600 VDEQISDPQG VEILTVRFNN LCQEAIKYAE EGAVAVETYN AAMIALRDSG KRIADMKKNV 660 AKAAPPSSHD SGSIQEESIK KVPLAFGEMV PPLWPWQEAL PHRFNLNDVG VPVTGINQPS 720 MAGSIQPDGG HPDNTVVYTC FKSMTWVIEN KNSTSAGKVA VINLKLQDYG KNPAGETDVQ 780 FRVTRVTLEP MLRSMAYIGQ QLSAPANRVA VINLKALKGQ GVGIDAP*

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MDSEIFLDVE AEDRESDKGV KQNANDNFAG REIITQDEDG NTKPYVGMEF ESEDAAKALY  60
DAYARCAGFS THVGQFTRNK PDGPIVTWEF ACSREVFRKK NVESCNAMLR VERKDANTWV  120
ATKFIEDHNH SMESPNKVHY LRPRRHFAGA AKNTAETLDV SSDAYVSMDG NHAPYEPNRG  180
GRSVSPVEPN PPARNVAPIN YTGPSSRKRT LGRDAQNLLN YFKKMQAENP GFYYAIQLDD  240
ENRMTNVFWT DARSRTTYNY FGDAVIFDTM YRPNQYQVPF APFTGVNHHG QMVLFGCALL  300
LDESESSFTW LFKTWLSAMN DRPPISITTD QDRAIQVAVA QVFPDTRHCI CKWHILREGQ  360
ERLAHIYLAN PSFYGELYSC INFSEKIEDF ESSWLSLLDR YDLRRNDWLQ AVYNARKQWA  420
PVYFRGTFFA AISSNQGVRS FFDGYVNQQT SIPLFFKQYE RALEHALEKE IEADYDTICT  480
TPVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANR IDEDGLVSKY RVAKYEHDDK  540
AYIVELNVSE MKASCSCQMF EHAGILCRHI LTVFTVTNVL TLPSQYILKR WTRNAKSWVG  600
VDEQISDPQG VEILTVRFNN LCQEAIKYAE EGAVAVETYN AAMIALRDSG KRIADMKKNV  660
AKAAPPSSHD SGSIQEESIK KVPLAFGEMV PPLWPWQEAL PHRFNLNDVG VPVTGINQPS  720
MAGSIQPDGG HPDNTVVYTC FKSMTWVIEN KNSTSAGKVA VINLKLQDYG KNPAGETDVQ  780
FRVTRVTLEP MLRSMAYIGQ QLSAPANRVA VINLKALKGQ GVGIDAP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna00378.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306439.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P6SBH8	0.0	A0A2P6SBH8_ROSCH; Putative transcription factor FAR family
STRING	XP_004306439.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	mrna00378.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]