PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna00296.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 151aa MW: 16756.7 Da PI: 7.8575

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna00296.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	57	79	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f tG+C+yGd Ck+ H++ mrna00296.1-v1.0-hybrid 57 VCNRFVNTGFCQYGDACKYFHPK 79 7********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.75E-13	4	61	No hit	No description
Pfam	PF06220	2.3E-6	5	38	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	12.953	52	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0022	54	79	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-7	56	81	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-6	57	79	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.3E-6	57	78	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0007010	developmental stage	whole plant fruit ripening stage
PO:0007027	developmental stage	whole plant fruit formation stage 70% to final size

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MPLGKYDCEY CNKQFQDTPY ARRRHLQSLQ HLRAKAQWFD SFKDPNDAYA QSLGRGVCNR 60 FVNTGFCQYG DACKYFHPKN NQQNTITQGA SGVTDNSQSS TIQGNQMVAG SSLPDVVVRD 120 NMGMSWGNLP PSLMPPPEGG YPPLPFVDWG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna00296.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302306.1	1e-110	PREDICTED: zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	6e-42	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2P6R7R3	1e-103	A0A2P6R7R3_ROSCH; Putative transcription factor C3H family
STRING	XP_004302306.1	1e-110	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	3e-25	C3H family protein

Link Out ? help Back to Top
Phytozome	mrna00296.1-v1.0-hybrid

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]