PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00151.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 407aa    MW: 46547.6 Da    PI: 4.1875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00151.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.94e-2351461128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrkn 75 
                              l pG rF P ++el+ +yL++kv+gkk++  e+vi e+d+y   +Pw++ +     k  a    ++k++yfF++++kk+a+++r++
  mrna00151.1-v1.0-hybrid   5 LLPGQRFCPMEDELLIFYLEPKVNGKKVPGnEDVICELDLYGDeDPWKIWErfgreK--AndlrRNKDLYFFTQKKKKTARSSRAS 88 
                              579************************7762467*******7658****64356542..1334456689***************** PP

                      NAM  76 r.atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                              r + + g+Wk + + ++v+  ++++       g kkt ++   ++ + ++ +W+m ey l
  mrna00151.1-v1.0-hybrid  89 RtVGNGGTWKGQNRGRKVFLLDQNQkptstvLGSKKTYTYK--NEGSVHHGRWIMYEYVL 146
                              *5666999*********998733334555559******998..45555689*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-274168IPR003441NAC domain
PROSITE profilePS5100530.0935169IPR003441NAC domain
PfamPF023653.4E-167146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKSDLLPGQR FCPMEDELLI FYLEPKVNGK KVPGNEDVIC ELDLYGDEDP WKIWERFGRE  60
KANDLRRNKD LYFFTQKKKK TARSSRASRT VGNGGTWKGQ NRGRKVFLLD QNQKPTSTVL  120
GSKKTYTYKN EGSVHHGRWI MYEYVLDESQ IQNKKVNKNE YVLCLLRKND VLPEKKRKRQ  180
AEEEDEMIED SVKDDDGDNN YSEPVNEAPQ EKRQRLLPSV EDEQERFLVG DQEFLQPEPS  240
LEYGQEAVPP SLEGESLCFQ MDENMGLQTP PMLDEAELQQ LFNEEFLPGG QIPLEEEPLD  300
AMQEFESCGQ QQLVAEPEPQ PREEDLGQQC QQVPTFSANE IAGGIGFSQD ENMVQQMGAE  360
PLGGNWGDAI DGESWSKSFM EDLVNYEPPP TMEVGDSNAF YSDFGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-12416614165Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00151.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462190.10.0PREDICTED: uncharacterized protein LOC105350893
TrEMBLA0A2P6QGR31e-118A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-18NAC domain containing protein 28