PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00006918.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 17120.8 Da PI: 10.3295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00094 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ Fs+ L H +H FANhyb_rscf00006918.1.g00001.1 27 FKCKTCNREFSSFQALGGHTASH 49 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +Fs+ L H+r+H FANhyb_rscf00006918.1.g00001.1 76 HECSVCGLVFSSGQALGGHMRRH 98 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-9 | 26 | 98 | No hit | No description |
Pfam | PF13912 | 6.4E-12 | 26 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 74 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-12 | 76 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.473 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0096 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MEKVLMLLSC RLETKFKRSS SSPNDVFKCK TCNREFSSFQ ALGGHTASHK KPRTLTDSDQ 60 DSKSETKSAQ TKPKKHECSV CGLVFSSGQA LGGHMRRHRT IDAGFVSSAP PAVVSKIPVL 120 MRSNSKRVMC LDMDLNLTPL ENDLKLLFGN MATKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024190787.1 | 2e-88 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 3e-35 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2P6RA88 | 4e-87 | A0A2P6RA88_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004302781.1 | 6e-86 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 9e-39 | C2H2 family protein |