PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00006696.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31915.1 Da PI: 4.6932 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.7e-30 | 58 | 116 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+ FANhyb_rscf00006696.1.g00001.1 58 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTSSHNHP 116 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-31 | 50 | 118 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-25 | 54 | 118 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-35 | 57 | 117 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.135 | 58 | 118 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 59 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDENLSSPEH DSEVSKELIM IRPETQASKR RKVAHQKTVV TVKIGPNVGK LKNEGPPSDF 60 WSWRKYGQKP IKGSPYPRGY YRCSTSKGCS AKKQVERSKT DASVLIITYT SSHNHPGPDV 120 TSTTKYQNPP PKEAQMQQDS EDDDHDLKAE VPKEEEQEPE QEQEQEQEQE RKVDVQQEPD 180 HFHYIQSPIR SSQDIVIYQE DPFSSGNHLE KTLLDEHPQS LCYSQLMSMS FSTTPKSEEE 240 EEDFYDELEE LLPTSSYFPS FMRSNLSQLE RIPFVPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-22 | 58 | 118 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 6e-22 | 58 | 118 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300445.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | A0A2P6PI52 | 1e-165 | A0A2P6PI52_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004300445.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-35 | WRKY DNA-binding protein 35 |