PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00006436.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 410aa MW: 44902.6 Da PI: 8.418

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00006436.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.8e-40	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s FANhyb_rscf00006436.1.g00001.1 70 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 130 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	63	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
DSPSTKATES IEEQDDSPKT EDSTSMEMLP ECNVNPKTPS IDEESAKPKS PEEKEQNDAT 60 NSKEKTLKKP DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG 120 AGRRKNKNSA SHYRQITISD ALQVARMDAP NGAHHPGLKS NGRVLSFGVD TPVCDSMASV 180 LNLANKKVLN GTTRNGFHKS EELVFPAPCK DKENGDDITA SKPQIPNANG FSSHIPCLPG 240 VPWPYQWNSA VPPPAFAPPG MPIPVFPAPY WNCGIPFQVP VPWFNPQTAS PNQKSPNSAS 300 SSPILGKHSR EGEILRPEVH LEKEEPSKQK NGCVLVPKTL RIDDPSEAAK SSIWTTLGIK 360 NDCISSGKGL FKAFQSQSKG DQKKHVLETS PAMLANPAAL SRSLNFHEST

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

DSPSTKATES IEEQDDSPKT EDSTSMEMLP ECNVNPKTPS IDEESAKPKS PEEKEQNDAT  60
NSKEKTLKKP DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG  120
AGRRKNKNSA SHYRQITISD ALQVARMDAP NGAHHPGLKS NGRVLSFGVD TPVCDSMASV  180
LNLANKKVLN GTTRNGFHKS EELVFPAPCK DKENGDDITA SKPQIPNANG FSSHIPCLPG  240
VPWPYQWNSA VPPPAFAPPG MPIPVFPAPY WNCGIPFQVP VPWFNPQTAS PNQKSPNSAS  300
SSPILGKHSR EGEILRPEVH LEKEEPSKQK NGCVLVPKTL RIDDPSEAAK SSIWTTLGIK  360
NDCISSGKGL FKAFQSQSKG DQKKHVLETS PAMLANPAAL SRSLNFHEST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299352.1	0.0	PREDICTED: cyclic dof factor 1
Swissprot	Q8LFV3	1e-103	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2P6P2P3	0.0	A0A2P6P2P3_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004299352.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]