PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005861.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 501aa    MW: 53108.7 Da    PI: 8.3545
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005861.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1159.6e-361732862110
                             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....ea 75 
                                      +++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++      +
  FANhyb_rscf00005861.1.g00001.1 173 VARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtLK 251
                                     57999***********************************************************888885544444333 PP

                             TCP  76 esssssasnsssgkaaksaakskksqksaasalnl 110
                                          s+++++++++ +saa +k+++ s++++ +l
  FANhyb_rscf00005861.1.g00001.1 252 IPTTPSNHHNTAEDSPTSAAAKKRKRPSNSEFVDL 286
                                     33333333333445555555444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085403.9E-18178IPR013746Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain
SuperFamilySSF539011.44E-5179IPR016039Thiolase-like
PfamPF036347.9E-29178257IPR005333Transcription factor, TCP
PROSITE profilePS5136926.003179233IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0004421Molecular Functionhydroxymethylglutaryl-CoA synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
GSTATMFSLQ LRAGQHPFSL KNIAAVMNIG EKLKSRHEFA PEKFCEIMKI MEHRYGGKDF  60
VTNKDISLLL PGTFYLTEAK MTSYFEDQED DGGGSDRSTS TGDPEENRNS EGNRNGAFTR  120
QLAGFHETAG MPLKMEPFDS DPPSDSDRLA HLKLPRAPPS VGMVPLAAMQ PAVARRSSTK  180
DRHTKVEGRG RRIRIPATCA ARIFQLTREL GHKSDGETVR WLLEHAEQAI IEATGTGTVP  240
AIAVSVGGTL KIPTTPSNHH NTAEDSPTSA AAKKRKRPSN SEFVDLSDAV SQSSGLAPVG  300
PSAPQPVPQG LVPVWAVGNA AGMMVPANAF WMIPSNGSAA RPLSTFVANG GGVEIRAPSP  360
ALSNSAVSTS TVGSKAAKKS SSTMAPSVSS SGSGNSNSNN GTKAQMLRDF TLEIYDKQEL  420
QLMGRPAGPG SHCQWLGDEV AWTEGTDGAC RVGWGLVQFE LGRLGPIELE GIRIVLHRLH  480
PPSSSSSSII SSTTIQAGSS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2f82_A4e-27179359439HMG-CoA synthase
2f9a_A4e-271793594393-Hydroxy-3-methylglutaryl coenzyme A synthase 1
2fa0_A4e-27179359439HMG-CoA synthase
2fa3_A4e-27179359439HMG-CoA synthase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300750.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646474e-68TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1Q1NA270.0A0A1Q1NA27_FRAVE; PCF transcription factor 8
STRINGXP_004300750.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-64TCP family protein