PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00005836.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 309aa MW: 34020.1 Da PI: 7.1269

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00005836.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.1e-13	163	208	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq FANhyb_rscf00005836.1.g00001.1 163 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKNLQ 208 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.085	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-16	160	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-13	161	212	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-15	162	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-13	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	163	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGNVGASNST NEEASFSPAS RLKNFSSGPP SSTSSMMSPI SEVGEKRMRS NNQDHTGGGF 60 SEGRGNNYVS GFPMGSWEDS SLLADDIIGS TNFRDDDDDV KTITGRNASE TQNMEARSRP 120 LAHHLSLPKT SAEMAAIENF LQFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL 180 QELVPNMDKQ TNTADMLDLA VDYIKNLQTE VQTLSEARAK CTCSNQQHCV ELKQCGLSPS 240 KCERALAPQP PPPHFLEGNG DMPSVGSSIK SLVKHVKASM VLFILYQNLS GSQFGFDIEC 300 PSFDYFQRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024157843.1	1e-146	transcription factor bHLH122-like
Swissprot	Q66GR3	1e-57	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2P6QLY3	1e-145	A0A2P6QLY3_ROSCH; Putative transcription factor bHLH family
STRING	XP_004295210.1	1e-144	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	8e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]