PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005774.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 482aa    MW: 52823.8 Da    PI: 6.9483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005774.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28123180260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     +DgynWrKYGqK v+g+ + rsYYrCt+++Cpvk++ve+s+ ++++++++Y g+H+h+k
  FANhyb_rscf00005774.1.g00001.1 123 EDGYNWRKYGQKLVRGNIYVRSYYRCTHPKCPVKRQVECSQ-NGQITDTVYFGQHDHPK 180
                                     8***************************************9.***************85 PP
2WRKY103.11.6e-32291349159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+ +d kvv+ tYeg+H+h+
  FANhyb_rscf00005774.1.g00001.1 291 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERAINDSKVVIATYEGQHDHD 349
                                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-25113181IPR003657WRKY domain
PROSITE profilePS5081121.161117181IPR003657WRKY domain
SuperFamilySSF1182901.31E-23118181IPR003657WRKY domain
SMARTSM007742.5E-31122180IPR003657WRKY domain
PfamPF031065.2E-22123179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-34281351IPR003657WRKY domain
SuperFamilySSF1182904.05E-29283351IPR003657WRKY domain
PROSITE profilePS5081135.117286351IPR003657WRKY domain
SMARTSM007743.7E-37291350IPR003657WRKY domain
PfamPF031061.1E-25292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
VTDEVASDNT PKKENDVKDE VASDNIPKKE NIDTAIHGSP HQTPTNGVCP LKLDDKGSAF  60
SKIPNTALQV PDGGITALQS NQEGSVSSLT SEKALLTPET GSVVLQHGHE GTTSSRVREK  120
PLEDGYNWRK YGQKLVRGNI YVRSYYRCTH PKCPVKRQVE CSQNGQITDT VYFGQHDHPK  180
PQLNVPIAVG FAVSVGEEKA EQRLLTSVED KPLEAHGNSP NKTEPVDLLQ LSNIAENEAV  240
QGVLSLSNRT RDGDPDPKRQ KKEKHYGNST PVDKPTGELR VVQTMSEVDI VNDGYRWRKY  300
GQKLVKGNPN PRSYYRCSNP GCPVKKHVER AINDSKVVIA TYEGQHDHDV PPSRTVTFNG  360
TASNVLPAVH IGDSGTKIEG HAVSHVACTS PKHESKPIEQ PDSESRTKSR RIDAAASEMV  420
DDTDMGPERK LNEQLIGKAC VQEEGDPPET IVCRAIKLQN GESGSIPSKQ EIRKPKTEPV  480
QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-34122352475WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460106.10.0PREDICTED: WRKY transcription factor 1 isoform X2
SwissprotQ9SI374e-80WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2P6S1I70.0A0A2P6S1I7_ROSCH; Putative transcription factor WRKY family
STRINGXP_004293454.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-83zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]