PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005773.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 630aa    MW: 70149.8 Da    PI: 5.4571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005773.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1556.8e-484606301170
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknssee 77 
                                     l++lL+ cA+avs++d++  ++lL+++++++sp gd  qRla++f+++L+ar+a+    +++++a  +s+    + +e+
  FANhyb_rscf00005773.1.g00001.1 460 LRNLLILCAQAVSTNDFRTSTELLKQIRQNSSPFGDGSQRLAHCFANGLEARMAGagIRTQISHAAVASKR---KAVEK 535
                                     6899**************************************************93334444444444444...49*** PP

                            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154
                                     l a+++   ++P+ k+s +  N++I++ +e+++++Hi+Df+i +G+QWp L+++L+ Rp+gpp+lRiTg++ p++g   
  FANhyb_rscf00005773.1.g00001.1 536 LRAYQVHLSACPFKKVSIFFMNKMIMQMAENATTLHIVDFGILYGFQWPILIHKLSMRPGGPPKLRITGIEGPQPGfrP 614
                                     ***************************************************************************9*99 PP

                            GRAS 155 keeleetgerLakfAe 170
                                     +e +eetg+rLak++e
  FANhyb_rscf00005773.1.g00001.1 615 AEWIEETGRRLAKYCE 630
                                     ************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.839434630IPR005202Transcription factor GRAS
PfamPF035142.3E-45460630IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDPTYTGFPD FINDIDFEPM LPNSSQFSET PNQYQFNQLS PDFDLLSNQF SIPPQPESSN  60
LAPPISLSTE GESFYPNGNS FSVPTTVSPG VDSLSSDDET VFKFVNQMLM EEEENIEQNH  120
TMSYDPLGLR VTERSFYDIL GQQYPVSPNQ QPQQPKRPFS VDQTNQQPLY DDQDVESPDS  180
FFSGNSSDFN ASSSPSTGPS NSVDSQSLGD YGEQKLSLLQ TSLSSDSVYQ FNSHSISNSQ  240
LSVPLTNSLP AYGNGMSESS VNQFLAQNIY TDSESVLQFQ RGLEEASKFL PKVNPLVIDL  300
ESSRVSPEMK AHAPTVMVNK ERSERMNSPS RRRGRRNSLN GSRERKKSPD VSRGRKKSPD  360
VSRGRKNHER EDVDSEEGRS SKQSAIYKEV EEEDDELSKL FDKVLLFNHG DTCGSSGDNV  420
DVQNEKSKNS QANGQPQTSN GGGEKSRAKK QGKKKETVDL RNLLILCAQA VSTNDFRTST  480
ELLKQIRQNS SPFGDGSQRL AHCFANGLEA RMAGAGIRTQ ISHAAVASKR KAVEKLRAYQ  540
VHLSACPFKK VSIFFMNKMI MQMAENATTL HIVDFGILYG FQWPILIHKL SMRPGGPPKL  600
RITGIEGPQP GFRPAEWIEE TGRRLAKYCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-234436301183Protein SCARECROW
5b3h_D5e-234436301183Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024156004.10.0uncharacterized protein LOC112163987
TrEMBLA0A2P6QJ020.0A0A2P6QJ02_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295968.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-96SCARECROW-like 14