PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005241.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 312aa    MW: 34298.6 Da    PI: 8.9016
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005241.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.98.9e-32104161260
                     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                                     ++vrY+eClkNhAa++Gg+++DGCgEfmp  geegt +alkCaAC+CHRnFHR+ev+ e
  FANhyb_rscf00005241.1.g00001.1 104 SNVRYRECLKNHAANIGGNVFDGCGEFMPC-GEEGTLEALKCAACDCHRNFHRKEVDGE 161
                                     689**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-23101159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-28105158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-29107158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.417108157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.6E-19210277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30212276IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-28215272IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRTSGSAALS YGGTHLTKES SGGGEKRRLG NIHNGTPTVL SAITATHQTL DHHHHPLQPH  60
HAQVVQPVPL PTRDPDPDRV IGSNAAVPSS AVARSKTPTL ATASNVRYRE CLKNHAANIG  120
GNVFDGCGEF MPCGEEGTLE ALKCAACDCH RNFHRKEVDG ETMTPFGHGS RSRSIMLSPL  180
QLPPPLPSPH HRHQKFSIVQ PMSGGGVAPP YSLSKKRFRT KFTAEQKVRM VEFAEKVGWR  240
IQKQDEEDVE RFCDEVGVKR QVLRVWMHNN KNTVKKMQHD NDITTTTSQL ALENNVEAHE  300
QQPGGQGGRT DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242162731875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293203.20.0PREDICTED: zinc-finger homeodomain protein 6
SwissprotQ9M9S09e-59ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2P6PYR51e-148A0A2P6PYR5_ROSCH; Putative transcription factor ZF-HD family
STRINGXP_004293203.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.28e-58homeobox protein 31