PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004856.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 205aa    MW: 24092.3 Da    PI: 4.8278
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004856.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.5e-16955147
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                    k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ g++y
  FANhyb_rscf00004856.1.g00002.1  9 KKIQNKAYLKATFSKRRKGLFGKARELCDMCGAEIAILTVSPGGRFY 55
                                    6899*****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.035161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-21171IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-161055IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRRKIEIKK IQNKAYLKAT FSKRRKGLFG KARELCDMCG AEIAILTVSP GGRFYNVGRP  60
NVESVIARYC GDETSITVDE NHDDCVISHE YDYEDLEGEQ EREVEVSTDE VEEEDEPISI  120
LAGEEELIKH IKEMNLIEHI NRERDGRMRK SLLLQKFWWD EEKPVDPEQL EMYYHSLKQL  180
RNNVVSVLND RKMRELYAKD YLSMI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308233.11e-120PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6Q8661e-75A0A2P6Q866_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004308233.11e-120(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2214924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-23M-type_MADS family protein