PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004811.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 330aa    MW: 36262.7 Da    PI: 7.0244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004811.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016150172123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     y+C+ C+++Fs+   L  H  +H
  FANhyb_rscf00004811.1.g00001.1 150 YECKTCNRCFSSFQALGGHRASH 172
                                     99**********99999998887 PP
2zf-C2H211.10.0013233255123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C+ Cg  F +   L  H+r+H
  FANhyb_rscf00004811.1.g00001.1 233 HECSVCGAEFASGQALGGHMRRH 255
                                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.98E-9149172No hitNo description
PfamPF139121.5E-10149174IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45150177IPR007087Zinc finger, C2H2
SMARTSM003550.21150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4228255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.98E-9228255No hitNo description
PfamPF139121.4E-12232256IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598233255IPR007087Zinc finger, C2H2
SMARTSM003550.019233255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMMMMMEAAN LEEDQSQMMI IKGKRTKRPR QSSPIVLTTT ASSSSSPGGG GDDVEDHHHH  60
HHHQSGMMST PIRVSDQDDE TTASPATSAE LTEMSTTEEE EDMANCLILL AQSGQTQIRK  120
VQEQQLLLLQ QQQPIKAVAA ADTAPGLYVY ECKTCNRCFS SFQALGGHRA SHKKPKVISN  180
VTNTTQAQPK KALSFMEDQD EYDRRFNNNT TSTTLSLQVS NRVFGNSKGT KVHECSVCGA  240
EFASGQALGG HMRRHRTFIN TTTTAPAAPT MSSPQSHQAS NKRPRSVLEL DLNLPAPEEE  300
RLDITKLPFS SSKKEQVIVF SASPLVGCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306266.20.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6RB510.0A0A2P6RB51_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306266.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-45C2H2 family protein