PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004750.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 402aa MW: 46251.4 Da PI: 9.6342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004750.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.8e-07	351	370	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr++a+ G C yG++CkF+H FANhyb_rscf00004750.1.g00001.1 351 VCRHYAQ-GRCYYGGNCKFSH 370 7****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	3.2E-8	19	66	IPR003034	SAP domain
SuperFamily	SSF68906	1.79E-7	20	66	No hit	No description
PROSITE profile	PS50800	9.886	31	65	IPR003034	SAP domain
Pfam	PF02037	5.6E-10	31	65	IPR003034	SAP domain
SMART	SM00513	2.3E-4	31	65	IPR003034	SAP domain
PROSITE profile	PS50103	14.831	346	373	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	347	372	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	347	371	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-6	348	374	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-4	350	370	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
PDGEEVVVPE LNQIDAKSYE HVHKIIQDNQ IEKMKVEQCK LYLRKNGLRL TGNKDTLIQR 60 IKEHLEILNG GGEKKYPASS FVLNCKGDAC TGDVVMFEQN VYEMFDIASR SGRGPPCGTR 120 TVAGRIVKES YGAAKQQHTF TIEVLWSKGE KPLPPLHPLL IKGRNLYRLK TLRQRWEYEG 180 ERQEALMEKH LRGSLARSDR ETRVQEKDMR KTLRTNWVSR KEEPIKNQSQ LNSTSTFISP 240 VQPHQSYPLV NPANLHQSVG PGNTNRGRHL GLSTDSAKPE TLTHHFKKPA TQPQDPQSCL 300 VTVEHGKVTT QPQVKQHSLM QDWYFSQASQ RQPLTIVTNC LLTSTQAQKQ VCRHYAQGRC 360 YYGGNCKFSH EMRENHKERM EERQPCNYGN SYNERRFYNP NL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

PDGEEVVVPE LNQIDAKSYE HVHKIIQDNQ IEKMKVEQCK LYLRKNGLRL TGNKDTLIQR  60
IKEHLEILNG GGEKKYPASS FVLNCKGDAC TGDVVMFEQN VYEMFDIASR SGRGPPCGTR  120
TVAGRIVKES YGAAKQQHTF TIEVLWSKGE KPLPPLHPLL IKGRNLYRLK TLRQRWEYEG  180
ERQEALMEKH LRGSLARSDR ETRVQEKDMR KTLRTNWVSR KEEPIKNQSQ LNSTSTFISP  240
VQPHQSYPLV NPANLHQSVG PGNTNRGRHL GLSTDSAKPE TLTHHFKKPA TQPQDPQSCL  300
VTVEHGKVTT QPQVKQHSLM QDWYFSQASQ RQPLTIVTNC LLTSTQAQKQ VCRHYAQGRC  360
YYGGNCKFSH EMRENHKERM EERQPCNYGN SYNERRFYNP NL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305763.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 62-like
Swissprot	Q338N2	2e-72	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A2P6RYW9	0.0	A0A2P6RYW9_ROSCH; Putative transcription regulator SAP family
STRING	XP_004305763.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11652	22	24

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]