PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004636.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 362aa    MW: 40632.9 Da    PI: 9.9232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004636.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.2e-182267147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  FANhyb_rscf00004636.1.g00001.1 22 RGHWRPAEDERLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                                    899*****************************.***********996 PP
2Myb_DNA-binding57.63e-1874117146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  FANhyb_rscf00004636.1.g00001.1  74 RRPFSEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 117
                                     679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7561768IPR017930Myb domain
SuperFamilySSF466891.98E-2920115IPR009057Homeodomain-like
SMARTSM007172.1E-142170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-262375IPR009057Homeodomain-like
PfamPF139214.1E-172585No hitNo description
CDDcd001675.39E-142566No hitNo description
PROSITE profilePS5129427.2269123IPR017930Myb domain
SMARTSM007172.1E-1573121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2176121IPR009057Homeodomain-like
CDDcd001671.11E-785116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRQLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA  120
RRQREQSKLI CGSKRSYQDF LISNDSLSNT STSISNAFDL RKLKSSTGFD HNQSSSTTST  180
VFEFRNPGKG RAMSFMESSR PKSSSCHNWN FASMTSSLSN PNSTSSSGFL RGSEISNYKV  240
SECFKGGNSD HRFVPRINGQ YSSSAFVYGR YRGSGSSSST FGLPNPRRVN VPINHFGCLS  300
SSTSPLGDIH EQHGSKMILK KEYQRAASAT TFEDHPHHHH DSSIEHNKEV PFIDFLGVGI  360
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31221227107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292552.10.0PREDICTED: myb-like protein AA
TrEMBLA0A2P6PSJ10.0A0A2P6PSJ1_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004292552.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.11e-63myb domain protein 54