PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004588.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 259aa    MW: 29608 Da    PI: 5.4217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004588.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131663148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+W+++Ed +lv +++++G  +W+  ++  g+ R++k+c++rw +yl
  FANhyb_rscf00004588.1.g00001.1 16 KGPWSPDEDHKLVAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWVNYL 63
                                    79******************99************************97 PP
2Myb_DNA-binding52.21.4e-1669114148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+++ eE+e ++++ ++ G++ W+ Ia++++ gRt++++k++w+++l
  FANhyb_rscf00004588.1.g00001.1  69 RGNFSREEEETIIKLQQKIGNR-WSVIAAKLP-GRTDNEIKNYWHTHL 114
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23766IPR009057Homeodomain-like
PROSITE profilePS5129412.9341163IPR017930Myb domain
SuperFamilySSF466893.12E-2913110IPR009057Homeodomain-like
SMARTSM007177.0E-81565IPR001005SANT/Myb domain
PfamPF002495.7E-121663IPR001005SANT/Myb domain
CDDcd001671.17E-61863No hitNo description
PROSITE profilePS5129425.53464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2667118IPR009057Homeodomain-like
SMARTSM007174.7E-1668116IPR001005SANT/Myb domain
PfamPF002497.4E-1569114IPR001005SANT/Myb domain
CDDcd001675.57E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRRSTQQCD EKRLKKGPWS PDEDHKLVAY IQRYGIWNWS QMPKPAGLAR SGKSCRLRWV  60
NYLRPDIKRG NFSREEEETI IKLQQKIGNR WSVIAAKLPG RTDNEIKNYW HTHLKKRLNN  120
DKSNRVENTS SETETFLLDE EAPKASLLET SRENLSPSSS GIADEIDHKP QITEQQSICD  180
TFGELQSLWT HSQVTSTAVE DSEAMFVDSA GLTLSTAADQ VWLQQEPIFP CGSYSDDAHV  240
LMSDYWVNLS VQSDETNGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293617.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2P6Q3D41e-169A0A2P6Q3D4_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004293617.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.17e-57myb domain protein 58