PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004505.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17314.8 Da    PI: 9.9945
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004505.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.6e-221053245
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                    r+ ++  rqvtfskRr+g++KKA+E+ +LC+aeva+++fs+ gk
  FANhyb_rscf00004505.1.g00002.1 10 RVMDNNSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGK 53
                                    6778889**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.109161IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-29172IPR002100Transcription factor, MADS-box
CDDcd002653.54E-35275No hitNo description
PRINTSPR004049.7E-22323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGRRKIEMKR VMDNNSRQVT FSKRRTGLFK KAHEIATLCG AEVAIVVFSP GGKPFSFGHP  60
NVDSVADRFL NREEDEDNTD DRSVRRSGKA LLKAKTKWEV LIQEMSELVE AKQSLEDLRE  120
SVMARVSDME ASSSLLLLAN KPMKETEKNV AKSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19180183MEF2 CHIMERA
6byy_B4e-19180183MEF2 CHIMERA
6byy_C4e-19180183MEF2 CHIMERA
6byy_D4e-19180183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460177.11e-102PREDICTED: agamous-like MADS-box protein AGL62
SwissprotO647032e-39AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A2P6Q5E63e-80A0A2P6Q5E6_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004294548.12e-89(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-38AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]